C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005JA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000004939-ENSG00000108309 CGP 9606 17:44248385-44318671
GeneTranscriptPositionBiotype
ENSG00000004939 (SLC4A1)
solute carrier family 4 (anion exchanger), member 1 (Diego blood group) 		ENST00000262418 (SLC4A1-001) 44248385-44268141 protein_coding
ENST00000399246 (SLC4A1-201) 44248390-44268134 protein_coding
ENST00000471005 (SLC4A1-003) 44260404-44262066 processed_transcript
ENST00000497360 (SLC4A1-002) 44257193-44268124 retained_intron
ENST00000498270 (SLC4A1-004) 44260805-44268141 retained_intron
ENSG00000108309 (RUNDC3A)
RUN domain containing 3A 		ENST00000225441 (RUNDC3A-002) 44308596-44317870 protein_coding
ENST00000426726 (RUNDC3A-001) 44308559-44318671 protein_coding
ENST00000587483 (RUNDC3A-004) 44310704-44318669 retained_intron
ENST00000588564 (RUNDC3A-007) 44316555-44318670 retained_intron
ENST00000590834 (RUNDC3A-003) 44308413-44318670 retained_intron
ENST00000590941 (RUNDC3A-005) 44308583-44317726 protein_coding
ENST00000593079 (RUNDC3A-006) 44314758-44315713 retained_intron
ENST00000612735 (RUNDC3A-201) 44308833-44316740 protein_coding
ENSG00000239702 (RN7SL507P)
RNA, 7SL, cytoplasmic 507, pseudogene 		ENST00000474076 (RN7SL507P-201) 44290856-44291151 misc_RNA
ENSG00000267750 (AC003102.3)
RUNDC3A antisense RNA 1 		ENST00000586388 (AC003102.3-002) 44302517-44308393 antisense
ENST00000588097 (AC003102.3-001) 44299574-44315315 antisense
CIL_0005JA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000006574-ENSMUSG00000006575 CGP 10090 11:102348824-102402555
GeneTranscriptPositionBiotype
ENSMUSG00000006574 (Slc4a1)
solute carrier family 4 (anion exchanger), member 1 		ENSMUST00000006749 (Slc4a1-001) 102348824-102365280 protein_coding
ENSMUST00000128405 (Slc4a1-002) 102360195-102365247 processed_transcript
ENSMUST00000145636 (Slc4a1-003) 102360162-102363704 processed_transcript
ENSMUST00000149993 (Slc4a1-004) 102359082-102360568 processed_transcript
ENSMUST00000151050 (Slc4a1-005) 102361387-102366203 processed_transcript
ENSMUSG00000006575 (Rundc3a)
RUN domain containing 3A 		ENSMUST00000006750 (Rundc3a-001) 102393403-102402555 protein_coding
ENSMUST00000107102 (Rundc3a-004) 102393403-102401754 protein_coding
ENSMUST00000107103 (Rundc3a-005) 102393403-102401754 protein_coding
ENSMUST00000107105 (Rundc3a-003) 102393403-102401754 protein_coding
ENSMUST00000128331 (Rundc3a-006) 102398119-102399779 processed_transcript
ENSMUST00000131219 (Rundc3a-009) 102399756-102402152 processed_transcript
ENSMUST00000132876 (Rundc3a-010) 102399858-102400785 processed_transcript
ENSMUST00000142157 (Rundc3a-007) 102399564-102402226 processed_transcript
ENSMUST00000146330 (Rundc3a-002) 102397864-102402555 retained_intron
ENSMUST00000150982 (Rundc3a-008) 102399167-102402229 processed_transcript
ENSMUSG00000087330 (Bloodlinc)
Bloodlinc, erythroid developmental long intergenic non-protein coding transcript 		ENSMUST00000126237 (Bloodlinc-001) 102375549-102377020 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005JA_0001ENSG00000004939ENST00000262418ENST00000399246ENST00000471005ENST00000497360ENST00000498270ENSG00000108309ENST00000225441ENST00000426726ENST00000587483ENST00000588564ENST00000590834ENST00000590941ENST00000593079ENST00000612735ENSG00000239702ENST00000474076ENSG00000267750ENST00000586388ENST00000588097CIL_0005JA_0002ENSMUSG00000006574ENSMUST00000006749ENSMUST00000128405ENSMUST00000145636ENSMUST00000149993ENSMUST00000151050ENSMUSG00000006575ENSMUST00000006750ENSMUST00000107102ENSMUST00000107103ENSMUST00000107105ENSMUST00000128331ENSMUST00000131219ENSMUST00000132876ENSMUST00000142157ENSMUST00000146330ENSMUST00000150982ENSMUSG00000087330ENSMUST00000126237
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005JA_0001ENSG00000004939ENST00000262418ENST00000399246ENST00000497360ENST00000498270ENSG00000108309ENST00000225441ENST00000426726ENST00000587483ENST00000588564ENST00000590834ENST00000590941ENST00000593079ENST00000612735ENSG00000239702ENST00000474076ENSG00000267750ENST00000586388ENST00000588097CIL_0005JA_0002ENSMUSG00000006574ENSMUST00000006749ENSMUST00000145636ENSMUSG00000006575ENSMUST00000006750ENSMUST00000107102ENSMUST00000107103ENSMUST00000107105ENSMUST00000128331ENSMUST00000132876ENSMUST00000142157ENSMUST00000146330ENSMUST00000150982ENSMUSG00000087330ENSMUST00000126237
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000004939 ENST00000262418 1.683±0.00 0.106±0.00 N/A 0.055±0.00 0.149±0.00 3.112±0.00 0.042±0.00 0.122±0.00 0.077±0.00 13.831±0.00 N/A 0.013±0.00 3.801±1.20 0.869±0.00
ENST00000399246 N/A 0.082±0.00 N/A 0.040±0.03 0.020±0.00 0.658±0.00 N/A N/A 0.026±0.00 N/A 0.097±0.00 0.051±0.00 5.307±0.00 0.342±0.08
ENST00000471005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497360 0.907±0.00 0.073±0.00 N/A N/A N/A N/A 0.029±0.00 N/A N/A 0.048±0.00 N/A 0.130±0.11 N/A N/A
ENST00000498270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.618±0.00 N/A N/A N/A
ENSG00000108309 ENST00000225441 N/A N/A N/A 27.234±5.05 0.249±0.00 N/A 0.020±0.00 N/A N/A N/A N/A 0.237±0.00 1.160±0.00 N/A
ENST00000426726 N/A N/A N/A 33.567±0.00 N/A 1.052±0.00 N/A N/A N/A N/A N/A 0.706±0.04 0.518±0.00 3.392±1.83
ENST00000587483 0.062±0.00 0.191±0.00 0.039±0.00 N/A N/A N/A 0.033±0.00 N/A 0.026±0.01 N/A N/A 0.117±0.03 N/A 0.786±0.00
ENST00000588564 N/A N/A N/A N/A N/A 1.794±0.00 N/A N/A N/A 1.131±0.00 N/A 1.490±0.00 1.876±0.09 N/A
ENST00000590834 N/A N/A N/A N/A 0.231±0.00 N/A 0.117±0.00 0.367±0.00 N/A N/A N/A N/A N/A 1.196±0.00
ENST00000590941 N/A N/A N/A 28.733±0.00 0.185±0.00 N/A 0.087±0.00 0.354±0.00 N/A 0.451±0.00 N/A 1.049±1.06 0.944±0.36 N/A
ENST00000593079 N/A N/A 0.455±0.00 N/A N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A
ENST00000612735 N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A 0.177±0.00 N/A N/A 2.440±1.88 0.801±0.35 6.021±0.00
ENSG00000239702 ENST00000474076 0.526±0.00 0.844±0.00 N/A N/A 0.229±0.00 0.214±0.01 0.406±0.00 0.074±0.00 0.455±0.00 0.072±0.00 N/A N/A N/A 0.197±0.00
ENSG00000267750 ENST00000586388 N/A N/A 0.108±0.00 N/A N/A 0.222±0.00 0.005±0.00 N/A N/A 0.072±0.00 N/A N/A N/A N/A
ENST00000588097 0.101±0.00 0.391±0.00 N/A N/A 0.145±0.00 0.063±0.00 0.036±0.03 0.207±0.00 0.063±0.00 0.072±0.00 0.096±0.00 0.052±0.00 N/A 0.269±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006574 ENSMUST00000006749 0.038±0.02 0.015±0.01 0.004±0.00 0.387±0.26 0.026±0.01 0.068±0.02 0.984±0.79 N/A 222.816±252.62 0.461±0.20 0.016±0.01 0.035±0.02 19.851±16.72 0.041±0.00
ENSMUST00000128405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.069±0.00 190.769±140.52 N/A
ENSMUST00000149993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151050 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000006575 ENSMUST00000006750 0.282±0.09 6.666±2.47 0.777±0.10 61.799±5.82 0.537±0.18 2.319±0.81 0.065±0.00 1.668±0.63 0.694±0.40 0.513±0.06 0.111±0.04 1.139±0.79 0.286±0.12 2.910±0.51
ENSMUST00000107102 N/A N/A N/A 37.208±0.00 N/A N/A N/A N/A N/A N/A N/A 0.324±0.00 N/A N/A
ENSMUST00000107103 N/A N/A N/A 21.765±0.00 N/A N/A N/A N/A N/A N/A N/A 0.547±0.00 0.130±0.00 N/A
ENSMUST00000107105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENSMUST00000128331 N/A N/A N/A 121.659±0.00 N/A N/A N/A N/A N/A N/A 0.146±0.00 0.637±0.00 N/A N/A
ENSMUST00000131219 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.369±0.00 N/A N/A 15.277±0.00
ENSMUST00000142157 N/A 8.867±2.57 N/A N/A N/A 2.503±0.82 N/A N/A N/A N/A 0.145±0.07 1.000±0.00 0.415±0.00 6.351±0.00
ENSMUST00000146330 0.390±0.00 3.290±0.96 0.174±0.02 28.872±4.57 0.347±0.01 1.035±0.33 0.063±0.00 1.222±0.65 1.522±0.66 0.171±0.03 0.173±0.02 0.614±0.22 0.302±0.17 12.460±4.86
ENSMUST00000150982 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.215±0.47 0.345±0.00 N/A
ENSMUSG00000087330 ENSMUST00000126237 0.057±0.00 0.159±0.06 0.059±0.04 0.013±0.00 N/A 1.018±0.45 0.111±0.00 0.057±0.00 0.384±0.19 N/A N/A N/A 0.049±0.03 0.117±0.00

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