C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (anion exchanger), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000006749 Slc4a1-001 ENSMUSG00000006574 10090 - 11:102348824-102365280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000006749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000006749 0.038±0.02 0.015±0.01 0.004±0.00 0.387±0.26 0.026±0.01 0.068±0.02 0.984±0.79 222.816±252.62 0.461±0.20 0.016±0.01 0.035±0.02 19.851±16.72 0.041±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B6 CIL_0009B6_0002 VISTA 11:102063033-102664797
CIL_0007ST CIL_0007ST_0002 VISTA 11:102292756-102896210
CIL_0004D5 CIL_0004D5_0003 CGP 11:102304560-102366203
CIL_0005JA CIL_0005JA_0002 CGP 11:102348824-102402555

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005452 ISS inorganic anion exchanger activity
GO:0005515 IPI protein binding
GO:0005887 ISS integral component of plasma membrane
GO:0006821 IDA chloride transport
GO:0008022 IEA protein C-terminus binding
GO:0015106 ISS bicarbonate transmembrane transporter activity
GO:0015108 IDA chloride transmembrane transporter activity
GO:0015301 ISS anion:anion antiporter activity
GO:0015701 ISS bicarbonate transport
GO:0016020 IDA membrane
GO:0016323 IDA basolateral plasma membrane
GO:0030018 ISS Z disc
GO:0030506 IEA ankyrin binding
GO:0030863 IDA cortical cytoskeleton
GO:0042803 IEA protein homodimerization activity
GO:0070062 IEA extracellular vesicular exosome
GO:0072562 IEA blood microparticle
GO:1902476 IDA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000078497 slc4a1b-001 protein_coding Danio_rerio 1.00053e-42 180
ENST00000262418 SLC4A1-001 protein_coding Homo_sapiens 0 2386
ENST00000399246 SLC4A1-201 protein_coding Homo_sapiens 0 1014
ENST00000497360 SLC4A1-002 retained_intron Homo_sapiens 0 1120

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