C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valyl-tRNA synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087315 Vars-002 ENSMUSG00000007029 10090 + 17:35000987-35016322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087315
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087315 15.557±5.43 11.332±2.85 11.685±0.89 22.945±7.02 32.063±8.88 17.147±5.27 5.797±2.30 8.925±1.69 18.535±13.04 13.289±1.32 8.519±0.95 28.514±7.14 17.747±13.61 102.440±33.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002161 IEA aminoacyl-tRNA editing activity
GO:0004832 IEA valine-tRNA ligase activity
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006438 IEA valyl-tRNA aminoacylation
GO:0006450 IEA regulation of translational fidelity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000211402 VARS-001 protein_coding Homo_sapiens 0 4488
ENST00000375663 VARS-001 protein_coding Homo_sapiens 0 4488
ENST00000420919 VARS-006 protein_coding Homo_sapiens 0 894
ENST00000422694 VARS-001 protein_coding Homo_sapiens 0 4482
ENST00000424974 VARS-001 protein_coding Homo_sapiens 0 1242
ENST00000425144 VARS-001 protein_coding Homo_sapiens 0 4250
ENST00000428445 VARS-006 protein_coding Homo_sapiens 0 894
ENST00000428796 VARS-006 protein_coding Homo_sapiens 0 894
ENST00000435299 VARS-006 protein_coding Homo_sapiens 0 894
ENST00000435657 VARS-001 protein_coding Homo_sapiens 0 4482
ENST00000445152 VARS-006 protein_coding Homo_sapiens 0 894
ENST00000446350 VARS-006 protein_coding Homo_sapiens 0 894
ENST00000457796 VARS-001 protein_coding Homo_sapiens 0 4488
ENST00000459667 VARS-012 retained_intron Homo_sapiens 8.00141e-43 178
ENST00000459794 VARS-011 retained_intron Homo_sapiens 0 377
ENST00000459886 VARS-009 retained_intron Homo_sapiens 0 255
ENST00000460877 VARS-004 retained_intron Homo_sapiens 0 684
ENST00000461227 VARS-013 retained_intron Homo_sapiens 0 409
ENST00000461265 VARS-005 retained_intron Homo_sapiens 0 599
ENST00000461328 VARS-008 retained_intron Homo_sapiens 0 462
ENST00000461732 VARS-003 retained_intron Homo_sapiens 0 1160
ENST00000461874 VARS-009 retained_intron Homo_sapiens 0 255
ENST00000462575 VARS-009 retained_intron Homo_sapiens 0 255
ENST00000462946 VARS-010 processed_transcript Homo_sapiens 0 682
ENST00000463184 VARS-013 retained_intron Homo_sapiens 0 409
ENST00000463326 VARS-008 retained_intron Homo_sapiens 0 462
ENST00000465840 VARS-004 retained_intron Homo_sapiens 0 684
ENST00000466721 VARS-011 retained_intron Homo_sapiens 0 377
ENST00000466837 VARS-011 retained_intron Homo_sapiens 0 377
ENST00000467893 VARS-004 retained_intron Homo_sapiens 0 361
ENST00000469502 VARS-014 processed_transcript Homo_sapiens 6e-31 137
ENST00000469542 VARS-010 processed_transcript Homo_sapiens 0 682
ENST00000470081 VARS-004 retained_intron Homo_sapiens 0 684
ENST00000470953 VARS-014 processed_transcript Homo_sapiens 6e-31 137
ENST00000471313 VARS-012 retained_intron Homo_sapiens 8.00141e-43 178
ENST00000472262 VARS-014 processed_transcript Homo_sapiens 6e-31 137
ENST00000473229 VARS-014 processed_transcript Homo_sapiens 6e-31 137
ENST00000473547 VARS-004 retained_intron Homo_sapiens 0 684
ENST00000473650 VARS-009 retained_intron Homo_sapiens 0 255
ENST00000473729 VARS-005 retained_intron Homo_sapiens 0 599
ENST00000474299 VARS-010 processed_transcript Homo_sapiens 0 682
ENST00000474643 VARS-005 retained_intron Homo_sapiens 0 599
ENST00000476714 VARS-012 retained_intron Homo_sapiens 8.00141e-43 178
ENST00000476915 VARS-008 retained_intron Homo_sapiens 0 462
ENST00000478549 VARS-012 retained_intron Homo_sapiens 8.00141e-43 178
ENST00000478826 VARS-003 retained_intron Homo_sapiens 0 1160
ENST00000479051 VARS-011 retained_intron Homo_sapiens 0 377
ENST00000479323 VARS-013 retained_intron Homo_sapiens 0 409
ENST00000481159 VARS-013 retained_intron Homo_sapiens 0 409
ENST00000482057 VARS-003 retained_intron Homo_sapiens 0 1160
ENST00000482263 VARS-013 retained_intron Homo_sapiens 0 409
ENST00000482300 VARS-011 retained_intron Homo_sapiens 0 377
ENST00000482996 VARS-010 processed_transcript Homo_sapiens 0 682
ENST00000485047 VARS-012 retained_intron Homo_sapiens 8.00141e-43 178
ENST00000486768 VARS-008 retained_intron Homo_sapiens 0 462
ENST00000486789 VARS-009 retained_intron Homo_sapiens 0 255
ENST00000487025 VARS-012 retained_intron Homo_sapiens 8.00141e-43 178
ENST00000487524 VARS-010 processed_transcript Homo_sapiens 0 682
ENST00000488037 VARS-014 processed_transcript Homo_sapiens 6e-31 137
ENST00000488448 VARS-005 retained_intron Homo_sapiens 0 599
ENST00000489089 VARS-008 retained_intron Homo_sapiens 0 462
ENST00000489382 VARS-003 retained_intron Homo_sapiens 0 1160
ENST00000489979 VARS-004 retained_intron Homo_sapiens 0 684
ENST00000490548 VARS-008 retained_intron Homo_sapiens 0 462
ENST00000491232 VARS-010 processed_transcript Homo_sapiens 0 682
ENST00000491744 VARS-003 retained_intron Homo_sapiens 0 710
ENST00000491745 VARS-011 retained_intron Homo_sapiens 0 377
ENST00000494362 VARS-005 retained_intron Homo_sapiens 0 599
ENST00000495010 VARS-003 retained_intron Homo_sapiens 0 1160
ENST00000495637 VARS-005 retained_intron Homo_sapiens 0 599
ENST00000495738 VARS-004 retained_intron Homo_sapiens 0 684
ENST00000496018 VARS-003 retained_intron Homo_sapiens 0 1160
ENST00000497172 VARS-009 retained_intron Homo_sapiens 0 255

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