C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD51 homolog C
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000007646 Rad51c 10090 - 11:87376645-87404954 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007790 Rad51c-001 87379097-87404954 protein_coding
  ENSMUST00000067692 Rad51c-002 87376645-87404523 protein_coding
  ENSMUST00000129400 Rad51c-003 87379384-87404423 nonsense_mediated_decay
  ENSMUST00000153073 Rad51c-004 87378591-87404506 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007790ENSMUST00000067692ENSMUST00000129400ENSMUST00000153073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007790 0.232±0.19 N/A 0.111±0.00 0.568±0.00 N/A 0.193±0.00 N/A 0.223±0.11 0.592±0.55 0.155±0.06 0.051±0.02 0.718±0.30 0.496±0.21 3.917±1.26
ENSMUST00000067692 0.080±0.04 0.151±0.09 0.211±0.00 0.614±0.26 0.119±0.05 0.367±0.06 0.015±0.00 0.074±0.00 0.269±0.21 0.186±0.10 0.037±0.02 0.415±0.29 0.159±0.07 N/A
ENSMUST00000129400 0.066±0.00 0.305±0.04 0.237±0.00 N/A N/A N/A N/A N/A 0.173±0.08 N/A 0.230±0.04 N/A 0.803±0.67 N/A
ENSMUST00000153073 0.304±0.28 0.202±0.07 0.284±0.01 1.428±0.90 0.244±0.08 0.310±0.14 0.246±0.03 0.194±0.09 1.252±1.00 0.303±0.10 0.084±0.06 0.684±0.34 1.302±1.02 4.848±2.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000400 ISS four-way junction DNA binding
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0000737 IMP DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005657 ISS replication fork
GO:0005737 ISS cytoplasm
GO:0005739 IEA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006281 ISS DNA repair
GO:0006310 IEA DNA recombination
GO:0007066 IMP female meiosis sister chromatid cohesion
GO:0007131 IMP reciprocal meiotic recombination
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008821 IMP crossover junction endodeoxyribonuclease activity
GO:0010971 ISS positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 ISS Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0033065 ISS Rad51C-XRCC3 complex
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048476 IC Holliday junction resolvase complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068919 rad51c rad51 homolog C (S. cerevisiae) protein_coding Danio_rerio
ENSG00000108384 RAD51C RAD51 paralog C protein_coding Homo_sapiens

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