C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129400 Rad51c-003 ENSMUSG00000007646 10090 - 11:87379384-87404423 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderLiverMusclePlacentaENSMUST00000129400
Transcript ID Adipose Adrenal Bladder Liver Muscle Placenta
ENSMUST00000129400 0.066±0.00 0.305±0.04 0.237±0.00 0.173±0.08 0.230±0.04 0.803±0.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IMP DNA catabolic process, endonucleolytic
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0007066 IMP female meiosis sister chromatid cohesion
GO:0007131 IMP reciprocal meiotic recombination
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008821 IMP crossover junction endodeoxyribonuclease activity
GO:0048476 IC Holliday junction resolvase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337432 RAD51C-001 protein_coding Homo_sapiens 0 575
ENST00000413590 RAD51C-011 protein_coding Homo_sapiens 0 568
ENST00000421782 RAD51C-013 protein_coding Homo_sapiens 0 479
ENST00000425173 RAD51C-006 protein_coding Homo_sapiens 0 259
ENST00000461271 RAD51C-008 protein_coding Homo_sapiens 0 337
ENST00000475762 RAD51C-002 nonsense_mediated_decay Homo_sapiens 0 337
ENST00000482007 RAD51C-003 nonsense_mediated_decay Homo_sapiens 0 1051
ENST00000486827 RAD51C-004 nonsense_mediated_decay Homo_sapiens 0 335
ENST00000487525 RAD51C-007 nonsense_mediated_decay Homo_sapiens 0 616
ENST00000487921 RAD51C-009 processed_transcript Homo_sapiens 0 339
ENST00000578151 RAD51C-017 retained_intron Homo_sapiens 0 252
ENST00000581221 RAD51C-015 retained_intron Homo_sapiens 0 442
ENST00000583539 RAD51C-018 protein_coding Homo_sapiens 0 503
ENST00000584617 RAD51C-014 nonsense_mediated_decay Homo_sapiens 0 503
ENST00000584804 RAD51C-016 protein_coding Homo_sapiens 0 254
ENST00000622327 RAD51C-019 protein_coding Homo_sapiens 1.4013e-45 187

Loading