C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000153073 Rad51c-004 ENSMUSG00000007646 10090 - 11:87378591-87404506 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000153073
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000153073 0.304±0.28 0.202±0.07 0.284±0.01 1.428±0.90 0.244±0.08 0.310±0.14 0.246±0.03 0.194±0.09 1.252±1.00 0.303±0.10 0.084±0.06 0.684±0.34 1.302±1.02 4.848±2.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000737 IMP DNA catabolic process, endonucleolytic
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0007066 IMP female meiosis sister chromatid cohesion
GO:0007131 IMP reciprocal meiotic recombination
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008821 IMP crossover junction endodeoxyribonuclease activity
GO:0048476 IC Holliday junction resolvase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337432 RAD51C-001 protein_coding Homo_sapiens 0 1149
ENST00000413590 RAD51C-011 protein_coding Homo_sapiens 0 734
ENST00000421782 RAD51C-013 protein_coding Homo_sapiens 0 479
ENST00000425173 RAD51C-006 protein_coding Homo_sapiens 0 617
ENST00000461271 RAD51C-008 protein_coding Homo_sapiens 0 741
ENST00000475762 RAD51C-002 nonsense_mediated_decay Homo_sapiens 0 845
ENST00000482007 RAD51C-003 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000486827 RAD51C-004 nonsense_mediated_decay Homo_sapiens 0 335
ENST00000487525 RAD51C-007 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000487921 RAD51C-009 processed_transcript Homo_sapiens 0 695
ENST00000578151 RAD51C-017 retained_intron Homo_sapiens 0 252
ENST00000581221 RAD51C-015 retained_intron Homo_sapiens 0 320
ENST00000583539 RAD51C-018 protein_coding Homo_sapiens 0 1149
ENST00000584617 RAD51C-014 nonsense_mediated_decay Homo_sapiens 0 673
ENST00000584804 RAD51C-016 protein_coding Homo_sapiens 0 254
ENST00000622327 RAD51C-019 protein_coding Homo_sapiens 0 411

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