C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067692 Rad51c-002 ENSMUSG00000007646 10090 - 11:87376645-87404523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000067692
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000067692 0.080±0.04 0.151±0.09 0.211±0.00 0.614±0.26 0.119±0.05 0.367±0.06 0.015±0.00 0.074±0.00 0.269±0.21 0.186±0.10 0.037±0.02 0.415±0.29 0.159±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000400 ISS four-way junction DNA binding
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0000737 IMP DNA catabolic process, endonucleolytic
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005657 ISS replication fork
GO:0005737 ISS cytoplasm
GO:0005739 IEA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006281 ISS DNA repair
GO:0006310 IEA DNA recombination
GO:0007066 IMP female meiosis sister chromatid cohesion
GO:0007131 IMP reciprocal meiotic recombination
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008821 IMP crossover junction endodeoxyribonuclease activity
GO:0010971 ISS positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 ISS Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0033065 ISS Rad51C-XRCC3 complex
GO:0048471 ISS perinuclear region of cytoplasm
GO:0048476 IC Holliday junction resolvase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337432 RAD51C-001 protein_coding Homo_sapiens 0 1271
ENST00000413590 RAD51C-011 protein_coding Homo_sapiens 0 846
ENST00000421782 RAD51C-013 protein_coding Homo_sapiens 0 479
ENST00000425173 RAD51C-006 protein_coding Homo_sapiens 0 617
ENST00000461271 RAD51C-008 protein_coding Homo_sapiens 0 741
ENST00000475762 RAD51C-002 nonsense_mediated_decay Homo_sapiens 0 845
ENST00000482007 RAD51C-003 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000486827 RAD51C-004 nonsense_mediated_decay Homo_sapiens 0 335
ENST00000487525 RAD51C-007 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000487921 RAD51C-009 processed_transcript Homo_sapiens 0 695
ENST00000578151 RAD51C-017 retained_intron Homo_sapiens 0 252
ENST00000581221 RAD51C-015 retained_intron Homo_sapiens 0 442
ENST00000583539 RAD51C-018 protein_coding Homo_sapiens 0 1199
ENST00000584617 RAD51C-014 nonsense_mediated_decay Homo_sapiens 0 723
ENST00000584804 RAD51C-016 protein_coding Homo_sapiens 0 254
ENST00000622327 RAD51C-019 protein_coding Homo_sapiens 0 411

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