C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC condensin II complex, subunit H2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000008690 Ncaph2 10090 + 15:89355719-89372826 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000036987 Ncaph2-004 89355719-89372826 protein_coding
  ENSMUST00000074552 Ncaph2-001 89355736-89372826 protein_coding
  ENSMUST00000088717 Ncaph2-002 89355736-89372826 protein_coding
  ENSMUST00000123889 Ncaph2-005 89355821-89363904 retained_intron
  ENSMUST00000134900 Ncaph2-008 89369692-89370675 retained_intron
  ENSMUST00000136638 Ncaph2-011 89370298-89370932 retained_intron
  ENSMUST00000140665 Ncaph2-013 89370647-89371524 retained_intron
  ENSMUST00000141643 Ncaph2-006 89355805-89363880 retained_intron
  ENSMUST00000145259 Ncaph2-003 89355763-89372826 nonsense_mediated_decay
  ENSMUST00000145793 Ncaph2-007 89355914-89365331 retained_intron
  ENSMUST00000147207 Ncaph2-009 89369878-89371240 retained_intron
  ENSMUST00000147733 Ncaph2-012 89370753-89371563 retained_intron
  ENSMUST00000151523 Ncaph2-010 89370033-89371189 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074552ENSMUST00000088717ENSMUST00000145259ENSMUST00000147207ENSMUST00000147733
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074552 11.665±5.13 12.320±0.50 8.205±0.00 12.366±0.00 7.543±3.80 13.069±0.62 8.536±2.42 10.907±1.75 14.868±6.52 13.524±1.93 4.024±1.31 15.035±4.72 8.838±0.39 N/A
ENSMUST00000088717 4.974±0.00 N/A N/A 5.929±0.05 6.598±0.00 N/A N/A N/A 6.663±1.96 6.513±0.00 N/A N/A 18.560±14.38 N/A
ENSMUST00000145259 7.214±0.61 N/A 7.855±0.00 6.891±0.00 5.162±0.76 10.247±0.00 N/A 5.948±0.68 9.965±3.23 N/A N/A 7.932±0.00 12.289±2.25 N/A
ENSMUST00000147207 N/A N/A N/A 55.596±0.00 N/A N/A N/A N/A N/A N/A N/A 96.479±0.00 100.186±22.24 15.859±0.00
ENSMUST00000147733 N/A 41.157±3.40 N/A 35.731±0.00 41.181±9.98 46.904±10.39 21.962±0.00 34.995±8.09 30.971±0.00 N/A N/A 74.380±11.84 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026C CIL_00026C_0002 CGP 15:89351004-89372826
CIL_0000V1 CIL_0000V1_0003 CGP 15:89355719-89373818

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0030261 IEA chromosome condensation
GO:0033077 IMP T cell differentiation in thymus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033757 ncaph2 non-SMC condensin II complex, subunit H2 protein_coding Danio_rerio
ENSG00000025770 NCAPH2 non-SMC condensin II complex, subunit H2 protein_coding Homo_sapiens

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