C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 14
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000009549 Srp14 10090 - 2:118475850-118479711 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000009693 Srp14-001 118475850-118479711 protein_coding
  ENSMUST00000110862 Srp14-003 118478565-118479635 protein_coding
  ENSMUST00000138189 Srp14-002 118475861-118479648 processed_transcript
  ENSMUST00000149615 Srp14-004 118475851-118478883 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009693ENSMUST00000138189ENSMUST00000149615
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009693 36.722±5.82 51.362±3.64 100.600±14.52 110.053±44.28 33.126±3.58 22.622±2.28 33.748±5.72 37.904±7.15 41.301±17.92 43.241±2.07 73.964±3.08 50.122±44.65 95.557±27.68 126.144±60.12
ENSMUST00000138189 N/A N/A N/A N/A 22.792±0.00 N/A N/A N/A N/A N/A N/A 33.907±0.00 77.239±0.00 132.038±0.00
ENSMUST00000149615 N/A N/A N/A 97.214±0.00 39.211±0.00 N/A 10.395±0.75 N/A N/A N/A N/A 42.904±29.63 62.374±0.16 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W0 CIL_0008W0_0002 VISTA 2:118232227-118834856
CIL_0006QZ CIL_0006QZ_0002 CGP 2:118388618-118479711
CIL_0006QY CIL_0006QY_0002 CGP 2:118475850-118549687

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005786 IEA signal recognition particle, endoplasmic reticulum targeting
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IEA response to drug
GO:0044822 IEA poly(A) RNA binding
GO:0045047 IEA protein targeting to ER
GO:0045171 IEA intercellular bridge
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088272 srp14 signal recognition particle 14 protein_coding Danio_rerio
ENSG00000140319 SRP14 signal recognition particle 14kDa (homologous Alu RNA binding protein) protein_coding Homo_sapiens

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