C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal recognition particle 14kDa (homologous Alu RNA binding protein)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140319 SRP14 9606 - 15:40035739-40039188 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267884 SRP14-001 40035739-40039188 protein_coding
  ENST00000558243 SRP14-003 40036986-40039162 retained_intron
  ENST00000558527 SRP14-002 40036041-40039164 processed_transcript
  ENST00000558720 SRP14-005 40036042-40039050 protein_coding
  ENST00000559081 SRP14-007 40036688-40039153 protein_coding
  ENST00000559439 SRP14-006 40036254-40038873 processed_transcript
  ENST00000559475 SRP14-008 40036304-40038948 processed_transcript
  ENST00000560773 SRP14-004 40036243-40039156 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267884ENST00000558527ENST00000558720ENST00000560773
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267884 22.083±0.00 31.597±0.00 9.535±0.00 40.588±9.22 17.183±0.77 20.316±8.45 9.418±0.73 22.867±0.62 15.451±2.39 16.503±3.05 15.548±7.41 43.545±23.14 56.464±18.17 32.926±19.03
ENST00000558527 57.251±0.00 63.208±0.00 N/A 74.046±0.00 75.492±0.00 79.396±0.00 42.969±0.00 88.360±0.00 35.477±0.00 77.846±0.00 27.821±0.00 25.846±22.57 35.561±4.04 75.146±0.00
ENST00000558720 29.560±0.00 37.139±0.00 N/A 42.446±0.00 33.973±0.00 19.736±0.00 18.493±0.00 N/A 32.115±0.00 54.485±0.00 30.616±0.00 219.236±186.75 210.299±217.13 239.839±168.22
ENST00000560773 28.548±0.00 38.888±0.00 N/A 44.197±0.00 41.349±0.00 70.167±0.00 N/A N/A N/A N/A N/A N/A 134.552±0.00 48.111±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W0 CIL_0008W0_0001 VISTA 15:39791359-40393937
CIL_0006QZ CIL_0006QZ_0001 CGP 15:39934146-40039188
CIL_0006QY CIL_0006QY_0001 CGP 15:40035739-40108892

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005786 IDA:IEA signal recognition particle, endoplasmic reticulum targeting
GO:0005829 TAS cytosol
GO:0006412 TAS translation
GO:0006613 TAS cotranslational protein targeting to membrane
GO:0006614 IEA:TAS SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0010467 TAS gene expression
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IDA response to drug
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045047 IMP protein targeting to ER
GO:0045171 IDA intercellular bridge
GO:0048500 IEA signal recognition particle
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000088272 srp14 signal recognition particle 14 protein_coding Danio_rerio
ENSMUSG00000009549 Srp14 signal recognition particle 14 protein_coding Mus_musculus

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