C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal recognition particle 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009693 Srp14-001 ENSMUSG00000009549 10090 - 2:118475850-118479711 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000009693
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000009693 36.722±5.82 51.362±3.64 100.600±14.52 110.053±44.28 33.126±3.58 22.622±2.28 33.748±5.72 37.904±7.15 41.301±17.92 43.241±2.07 73.964±3.08 50.122±44.65 95.557±27.68 126.144±60.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W0 CIL_0008W0_0002 VISTA 2:118232227-118834856
CIL_0006QZ CIL_0006QZ_0002 CGP 2:118388618-118479711
CIL_0006QY CIL_0006QY_0002 CGP 2:118475850-118549687

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006614 IEA SRP-dependent cotranslational protein targeting to membrane
GO:0008312 IEA 7S RNA binding
GO:0030942 IEA endoplasmic reticulum signal peptide binding
GO:0042493 IEA response to drug
GO:0044822 IEA poly(A) RNA binding
GO:0045047 IEA protein targeting to ER
GO:0045171 IEA intercellular bridge
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267884 SRP14-001 protein_coding Homo_sapiens 0 377
ENST00000558243 SRP14-003 retained_intron Homo_sapiens 2e-24 117
ENST00000558527 SRP14-002 processed_transcript Homo_sapiens 0 237
ENST00000559081 SRP14-007 protein_coding Homo_sapiens 0 287

Loading