C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cholinergic receptor, nicotinic, epsilon polypeptide
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014609 Chrne 10090 - 11:70614883-70619216 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000014753 Chrne-002 70614883-70619216 protein_coding
  ENSMUST00000102556 Chrne-001 70614883-70619194 protein_coding
  ENSMUST00000134836 Chrne-003 70614893-70615697 retained_intron
  ENSMUST00000135920 Chrne-005 70614885-70615673 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014753ENSMUST00000102556ENSMUST00000134836ENSMUST00000135920
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014753 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.00 0.090±0.00 2.450±0.43 N/A 0.017±0.00 3.674±1.06
ENSMUST00000102556 0.062±0.01 N/A 0.064±0.04 N/A 0.949±0.77 N/A N/A 0.231±0.12 0.262±0.23 0.034±0.00 7.159±1.76 0.113±0.05 0.058±0.00 N/A
ENSMUST00000134836 0.095±0.03 0.084±0.00 0.150±0.09 N/A 0.271±0.00 0.099±0.00 N/A 0.206±0.04 0.130±0.11 0.189±0.04 N/A 0.207±0.13 0.068±0.04 61.031±11.99
ENSMUST00000135920 N/A 0.480±0.06 0.139±0.00 0.372±0.04 0.258±0.13 0.288±0.00 0.137±0.04 N/A N/A 0.258±0.01 N/A 0.253±0.08 0.066±0.00 62.085±22.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001R8 CIL_0001R8_0002 CGP 11:70562881-70619216
CIL_0000P4 CIL_0000P4_0002 CGP 11:70614883-70619216

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004889 IGI acetylcholine-activated cation-selective channel activity
GO:0006812 IGI cation transport
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0042391 IGI regulation of membrane potential
GO:0045211 IDA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000034307 chrne cholinergic receptor, nicotinic, epsilon protein_coding Danio_rerio
ENSG00000108556 CHRNE cholinergic receptor, nicotinic, epsilon (muscle) protein_coding Homo_sapiens

Loading