C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, epsilon polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102556 Chrne-001 ENSMUSG00000014609 10090 - 11:70614883-70619194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverLungMuscleOvaryPlacentaENSMUST00000102556
Transcript ID Adipose Bladder Breast Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000102556 0.062±0.01 0.064±0.04 0.949±0.77 0.231±0.12 0.262±0.23 0.034±0.00 7.159±1.76 0.113±0.05 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001R8 CIL_0001R8_0002 CGP 11:70562881-70619216
CIL_0000P4 CIL_0000P4_0002 CGP 11:70614883-70619216

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IGI acetylcholine-activated cation-selective channel activity
GO:0006812 IGI cation transport
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0042391 IGI regulation of membrane potential
GO:0045211 IDA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293780 CHRNE-001 protein_coding Homo_sapiens 0 1330
ENST00000521575 C17orf107-002 protein_coding Homo_sapiens 6e-26 122
ENST00000572438 CHRNE-002 retained_intron Homo_sapiens 0 905

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