C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005K1_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125122-ENSG00000168701 CGP 9606 16:67207139-67229278
GeneTranscriptPositionBiotype
ENSG00000125122 (LRRC29)
leucine rich repeat containing 29 		ENST00000393992 (LRRC29-001) 67207140-67226818 protein_coding
ENST00000409037 (LRRC29-005) 67207140-67211085 protein_coding
ENST00000409509 (LRRC29-002) 67207139-67227010 protein_coding
ENST00000424285 (LRRC29-007) 67207880-67226877 protein_coding
ENST00000433915 (LRRC29-008) 67207648-67227013 protein_coding
ENST00000447579 (LRRC29-009) 67208390-67226788 protein_coding
ENST00000462169 (LRRC29-004) 67210348-67227027 processed_transcript
ENST00000485549 (LRRC29-006) 67210740-67227048 processed_transcript
ENSG00000168701 (TMEM208)
transmembrane protein 208 		ENST00000304800 (TMEM208-001) 67227113-67229278 protein_coding
ENST00000561586 (TMEM208-006) 67227145-67228956 retained_intron
ENST00000562235 (TMEM208-002) 67227157-67229278 nonsense_mediated_decay
ENST00000563168 (TMEM208-003) 67227113-67229248 retained_intron
ENST00000563271 (TMEM208-009) 67228526-67229278 retained_intron
ENST00000563426 (TMEM208-008) 67228518-67229278 processed_transcript
ENST00000563953 (TMEM208-007) 67227120-67229262 protein_coding
ENST00000564087 (TMEM208-012) 67227213-67228622 nonsense_mediated_decay
ENST00000564649 (TMEM208-010) 67228671-67229278 retained_intron
ENST00000565201 (TMEM208-011) 67227168-67229278 protein_coding
ENST00000566486 (TMEM208-004) 67227118-67228302 retained_intron
ENST00000567193 (TMEM208-005) 67227103-67229225 retained_intron
CIL_0005K1_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041679-ENSMUSG00000014856 CGP 10090 8:105312341-105335219
GeneTranscriptPositionBiotype
ENSMUSG00000014778 (Fhod1)
formin homology 2 domain containing 1 		ENSMUST00000014922 (Fhod1-001) 105329163-105347953 protein_coding
ENSMUST00000132777 (Fhod1-002) 105329163-105347909 retained_intron
ENSMUST00000134837 (Fhod1-004) 105330940-105331566 retained_intron
ENSMUST00000136439 (Fhod1-003) 105336553-105337907 retained_intron
ENSMUSG00000014856 (Tmem208)
transmembrane protein 208 		ENSMUST00000015000 (Tmem208-001) 105326354-105329057 protein_coding
ENSMUST00000098453 (Tmem208-003) 105326395-105335219 protein_coding
ENSMUST00000109372 (Tmem208-005) 105326455-105334801 nonsense_mediated_decay
ENSMUST00000126705 (Tmem208-004) 105326388-105329052 nonsense_mediated_decay
ENSMUST00000153146 (Tmem208-002) 105326362-105329055 nonsense_mediated_decay
ENSMUSG00000041679 (Lrrc29)
leucine rich repeat containing 29 		ENSMUST00000070508 (Lrrc29-201) 105312341-105326276 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005K1_0001ENSG00000125122ENST00000393992ENST00000409037ENST00000409509ENST00000424285ENST00000433915ENST00000447579ENST00000462169ENST00000485549ENSG00000168701ENST00000304800ENST00000561586ENST00000562235ENST00000563168ENST00000563271ENST00000563426ENST00000563953ENST00000564087ENST00000564649ENST00000565201ENST00000566486ENST00000567193CIL_0005K1_0002ENSMUSG00000014778ENSMUST00000014922ENSMUST00000132777ENSMUST00000134837ENSMUST00000136439ENSMUSG00000014856ENSMUST00000015000ENSMUST00000098453ENSMUST00000109372ENSMUST00000126705ENSMUST00000153146ENSMUSG00000041679ENSMUST00000070508
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005K1_0001ENSG00000125122ENST00000393992ENST00000409037ENST00000409509ENST00000424285ENST00000433915ENST00000447579ENST00000462169ENST00000485549ENSG00000168701ENST00000304800ENST00000562235ENST00000563426ENST00000564087ENST00000565201ENST00000567193CIL_0005K1_0002ENSMUSG00000014778ENSMUST00000014922ENSMUST00000132777ENSMUST00000134837ENSMUSG00000014856ENSMUST00000015000ENSMUST00000126705ENSMUST00000153146ENSMUSG00000041679ENSMUST00000070508
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125122 ENST00000393992 N/A N/A N/A 0.165±0.00 0.946±0.00 N/A 0.052±0.00 N/A N/A N/A N/A 0.640±0.46 1.053±0.70 N/A
ENST00000409037 N/A N/A 0.581±0.00 N/A 0.200±0.00 N/A N/A N/A N/A N/A N/A 0.263±0.00 N/A 0.279±0.00
ENST00000409509 0.177±0.00 0.555±0.00 N/A 0.442±0.06 N/A N/A N/A 1.306±0.00 0.517±0.00 N/A 0.368±0.28 0.492±0.00 0.461±0.01 0.729±0.00
ENST00000424285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.165±0.00 0.472±0.00 1.563±0.00
ENST00000433915 0.180±0.00 N/A N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A 0.141±0.00 0.605±0.31 0.931±0.00
ENST00000447579 N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A 0.115±0.00 N/A N/A
ENST00000462169 N/A N/A N/A 0.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485549 0.223±0.00 N/A N/A N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000168701 ENST00000304800 17.150±0.00 33.013±0.00 1.069±0.00 11.444±0.85 11.863±9.52 11.201±4.44 2.552±1.79 22.600±5.34 23.060±20.83 9.301±5.79 8.769±0.00 18.305±9.67 40.371±11.17 17.726±1.96
ENST00000561586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562235 N/A N/A N/A 3.207±0.00 1.442±0.00 N/A N/A N/A N/A 5.980±0.00 N/A N/A N/A N/A
ENST00000563168 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563271 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563426 N/A N/A N/A 3.440±0.00 N/A N/A N/A 14.031±0.00 N/A N/A N/A N/A N/A 10.063±0.00
ENST00000563953 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564087 N/A N/A N/A N/A 1.464±0.00 N/A N/A N/A 0.816±0.00 N/A N/A N/A N/A N/A
ENST00000564649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000565201 N/A N/A N/A N/A N/A N/A 0.654±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000566486 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567193 N/A N/A 3.145±0.00 3.422±0.00 1.179±0.00 1.582±0.00 0.931±0.00 N/A N/A 2.214±0.00 3.196±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000014778 ENSMUST00000014922 9.525±3.35 3.571±0.83 4.326±1.10 1.268±0.06 6.693±2.68 11.864±2.15 3.111±0.76 5.512±1.22 2.593±0.98 27.138±2.54 7.481±1.43 5.684±1.13 15.105±7.88 6.096±1.97
ENSMUST00000132777 3.015±0.44 1.689±0.00 2.747±0.21 1.153±0.04 2.835±0.35 4.024±0.54 1.342±0.19 2.308±0.16 N/A 8.774±1.05 2.066±0.23 2.251±0.52 5.909±0.00 N/A
ENSMUST00000134837 N/A N/A N/A N/A 11.750±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000014856 ENSMUST00000015000 30.713±4.76 34.427±2.17 23.741±6.28 14.724±5.94 24.072±5.17 45.378±6.96 14.379±1.93 47.958±3.29 41.609±5.61 N/A 13.340±1.43 30.321±5.88 39.381±12.50 15.913±0.11
ENSMUST00000098453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000109372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126705 16.512±0.18 16.855±2.43 16.843±4.32 14.123±5.05 17.707±1.88 19.219±0.00 N/A N/A 15.374±6.23 N/A N/A 22.313±2.54 N/A N/A
ENSMUST00000153146 N/A N/A N/A 7.935±1.86 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000041679 ENSMUST00000070508 2.586±0.20 2.509±1.40 2.027±0.52 0.583±0.09 2.785±0.49 2.672±0.87 0.276±0.01 2.649±0.44 4.925±3.23 2.912±0.40 0.235±0.09 1.281±0.78 1.325±0.01 31.495±15.74

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