C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: formin homology 2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000014922 Fhod1-001 ENSMUSG00000014778 10090 - 8:105329163-105347953 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000014922
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000014922 9.525±3.35 3.571±0.83 4.326±1.10 1.268±0.06 6.693±2.68 11.864±2.15 3.111±0.76 5.512±1.22 2.593±0.98 27.138±2.54 7.481±1.43 5.684±1.13 15.105±7.88 6.096±1.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005K1 CIL_0005K1_0002 CGP 8:105312341-105335219
CIL_0005K2 CIL_0005K2_0002 CGP 8:105326354-105347953
CIL_0003M0 CIL_0003M0_0003 CGP 8:105329163-105369881

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001725 IEA stress fiber
GO:0003779 IEA actin binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0016020 IEA membrane
GO:0042802 IEA identical protein binding
GO:0042995 IEA cell projection
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051496 IEA positive regulation of stress fiber assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000093281 FHOD3 (2 of 2)-201 protein_coding Danio_rerio 1e-17 97
ENSDART00000146050 FHOD3 (2 of 2)-001 protein_coding Danio_rerio 1e-17 97
ENST00000258201 FHOD1-001 protein_coding Homo_sapiens 0 1938
ENST00000561922 FHOD1-003 nonsense_mediated_decay Homo_sapiens 0 1051
ENST00000562266 FHOD1-009 retained_intron Homo_sapiens 2e-32 143
ENST00000566006 FHOD1-008 retained_intron Homo_sapiens 0 475
ENST00000566345 SLC9A5-008 protein_coding Homo_sapiens 2e-34 150
ENST00000567509 FHOD1-007 nonsense_mediated_decay Homo_sapiens 0 573
ENST00000567561 FHOD1-006 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000567752 FHOD1-002 retained_intron Homo_sapiens 0 1938
ENST00000568595 FHOD1-005 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000569085 FHOD1-010 retained_intron Homo_sapiens 8e-23 111

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