C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: surfeit gene 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000014867 Surf4 10090 - 2:26920040-26933928 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000015011 Surf4-001 26920040-26933928 protein_coding
  ENSMUST00000153641 Surf4-003 26921962-26933383 nonsense_mediated_decay
  ENSMUST00000154651 Surf4-002 26924970-26933781 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000015011ENSMUST00000153641
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000015011 85.655±2.84 129.375±13.48 81.259±6.09 26.124±11.78 81.623±10.64 117.962±3.96 34.497±5.44 83.598±9.27 66.221±26.66 63.301±10.85 23.049±12.19 140.682±36.93 152.419±4.79 67.567±2.60
ENSMUST00000153641 N/A 180.865±28.07 N/A N/A 99.308±3.84 N/A N/A N/A 93.062±7.28 87.255±1.80 N/A 137.284±19.09 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006DJ CIL_0006DJ_0002 CGP 2:26913383-26920183
CIL_0006DE CIL_0006DE_0002 CGP 2:26916367-26933928
CIL_0006DD CIL_0006DD_0002 CGP 2:26920040-26953496

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005793 IEA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0007030 IEA Golgi organization
GO:0010638 IEA positive regulation of organelle organization
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002702 surf4 surfeit gene 4 protein_coding Danio_rerio
ENSDARG00000035131 surf4l surfeit gene 4, like protein_coding Danio_rerio
ENSG00000148248 SURF4 surfeit 4 protein_coding Homo_sapiens

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