C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ligand dependent nuclear receptor corepressor-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000015882 Lcorl 10090 - 5:45697181-45857615 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000016026 Lcorl-002 45730332-45857499 protein_coding
  ENSMUST00000045586 Lcorl-001 45697181-45857615 protein_coding
  ENSMUST00000067997 Lcorl-003 45773322-45857501 protein_coding
  ENSMUST00000087164 Lcorl-005 45730335-45856551 protein_coding
  ENSMUST00000121573 Lcorl-004 45700450-45856552 protein_coding
  ENSMUST00000156295 Lcorl-006 45775259-45857615 retained_intron
  ENSMUST00000186633 Lcorl-008 45747284-45857497 nonsense_mediated_decay
  ENSMUST00000187615 Lcorl-009 45747276-45857481 nonsense_mediated_decay
  ENSMUST00000189859 Lcorl-010 45747255-45857479 protein_coding
  ENSMUST00000190036 Lcorl-007 45699291-45857498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000016026ENSMUST00000045586ENSMUST00000067997ENSMUST00000087164ENSMUST00000121573ENSMUST00000156295ENSMUST00000186633ENSMUST00000187615
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000016026 0.305±0.14 N/A 0.769±0.35 2.067±1.02 0.337±0.07 0.811±0.10 0.200±0.02 0.273±0.10 0.281±0.05 0.657±0.04 0.352±0.08 1.280±0.45 0.598±0.50 2.575±0.00
ENSMUST00000045586 0.548±0.00 0.504±0.16 0.373±0.08 4.346±3.00 0.485±0.15 0.549±0.11 0.077±0.01 0.426±0.01 1.074±0.79 0.503±0.11 0.125±0.04 0.896±0.45 0.146±0.00 0.909±0.08
ENSMUST00000067997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.776±0.00 N/A N/A
ENSMUST00000087164 0.421±0.00 0.424±0.04 N/A N/A 0.527±0.09 N/A N/A 0.149±0.00 N/A 0.266±0.00 N/A 1.233±0.48 N/A 2.513±0.49
ENSMUST00000121573 N/A 0.503±0.00 N/A 0.591±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156295 N/A 1.512±0.43 N/A N/A 0.634±0.11 1.919±0.82 N/A 1.422±0.00 0.889±0.00 1.264±0.09 N/A 1.715±0.25 N/A N/A
ENSMUST00000186633 N/A 1.068±0.00 N/A N/A N/A 2.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187615 N/A N/A N/A N/A N/A N/A N/A N/A 1.253±0.00 1.119±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032I CIL_00032I_0002 CGP 5:45529706-45700544
CIL_0002OQ CIL_0002OQ_0002 CGP 5:45669922-45857615
CIL_0002OP CIL_0002OP_0002 CGP 5:45697181-48306282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000178177 LCORL ligand dependent nuclear receptor corepressor-like protein_coding Homo_sapiens

Loading