C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand dependent nuclear receptor corepressor-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045586 Lcorl-001 ENSMUSG00000015882 10090 - 5:45697181-45857615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045586
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045586 0.548±0.00 0.504±0.16 0.373±0.08 4.346±3.00 0.485±0.15 0.549±0.11 0.077±0.01 0.426±0.01 1.074±0.79 0.503±0.11 0.125±0.04 0.896±0.45 0.146±0.00 0.909±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00032I CIL_00032I_0002 CGP 5:45529706-45700544
CIL_0002OQ CIL_0002OQ_0002 CGP 5:45669922-45857615
CIL_0002OP CIL_0002OP_0002 CGP 5:45697181-48306282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000326877 LCORL-001 protein_coding Homo_sapiens 0 2008
ENST00000382224 LCORL-002 protein_coding Homo_sapiens 0 998
ENST00000382226 LCORL-201 protein_coding Homo_sapiens 0 1445
ENST00000510121 LCORL-003 processed_transcript Homo_sapiens 0 409
ENST00000510451 LCORL-004 nonsense_mediated_decay Homo_sapiens 0 568
ENST00000512376 LCORL-005 processed_transcript Homo_sapiens 0 754

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