C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002OP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000178177-ENSG00000145147 CGP 9606 4:17841199-20620561
GeneTranscriptPositionBiotype
ENSG00000109805 (NCAPG)
non-SMC condensin I complex, subunit G 		ENST00000251496 (NCAPG-001) 17810902-17844862 protein_coding
ENST00000509719 (NCAPG-004) 17817232-17823147 retained_intron
ENST00000510063 (NCAPG-005) 17823699-17837161 protein_coding
ENST00000513226 (NCAPG-003) 17811028-17813346 retained_intron
ENST00000514176 (NCAPG-002) 17811022-17843448 nonsense_mediated_decay
ENSG00000145147 (SLIT2)
slit homolog 2 (Drosophila) 		ENST00000273739 (SLIT2-004) 20253590-20619286 protein_coding
ENST00000503823 (SLIT2-002) 20253260-20619120 protein_coding
ENST00000503837 (SLIT2-003) 20253816-20619183 protein_coding
ENST00000504154 (SLIT2-001) 20253564-20620557 protein_coding
ENST00000508541 (SLIT2-005) 20614863-20619166 retained_intron
ENST00000508824 (SLIT2-006) 20254920-20486215 protein_coding
ENST00000509099 (SLIT2-008) 20533399-20539566 retained_intron
ENST00000509394 (SLIT2-009) 20542494-20552721 processed_transcript
ENST00000509941 (SLIT2-010) 20553853-20569264 protein_coding
ENST00000511508 (SLIT2-012) 20542619-20568918 protein_coding
ENST00000512993 (SLIT2-011) 20598353-20620561 protein_coding
ENST00000622093 (SLIT2-201) 20253564-20620559 protein_coding
ENSG00000178177 (LCORL)
ligand dependent nuclear receptor corepressor-like 		ENST00000326877 (LCORL-001) 17841199-18021876 protein_coding
ENST00000382224 (LCORL-002) 17880595-18020734 protein_coding
ENST00000382226 (LCORL-201) 17880629-18021860 protein_coding
ENST00000510121 (LCORL-003) 17845640-17962032 processed_transcript
ENST00000510451 (LCORL-004) 17845497-18021757 nonsense_mediated_decay
ENST00000512376 (LCORL-005) 17960246-18021755 processed_transcript
ENSG00000235413 (KRT18P63)
keratin 18 pseudogene 63 		ENST00000505463 (KRT18P63-001) 17911674-17912976 processed_pseudogene
ENSG00000241612 (RP13-585F24.1)
 ENST00000488289 (RP13-585F24.1-001) 19813749-19814231 processed_pseudogene
ENSG00000248228 (SLIT2-IT1)
SLIT2 intronic transcript 1 (non-protein coding) 		ENST00000515882 (SLIT2-IT1-001) 20392189-20394856 sense_intronic
ENSG00000248238 (RP11-3J1.1)
 ENST00000505347 (RP11-3J1.1-001) 19172335-19456994 lincRNA
ENSG00000248515 (RP11-608O21.1)
 ENST00000511431 (RP11-608O21.1-001) 19455436-19909692 lincRNA
ENSG00000251048 (RP11-608B3.1)
 ENST00000503815 (RP11-608B3.1-001) 18488062-18489508 lincRNA
ENSG00000279379 (RP11-84N19.1)
 ENST00000623088 (RP11-84N19.1-001) 19257951-19258337 TEC
CIL_0002OP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000015882-ENSMUSG00000031558 CGP 10090 5:45697181-48306282
GeneTranscriptPositionBiotype
ENSMUSG00000015880 (Ncapg)
non-SMC condensin I complex, subunit G 		ENSMUST00000117396 (Ncapg-001) 45669922-45700544 protein_coding
ENSMUST00000123396 (Ncapg-005) 45698666-45700070 retained_intron
ENSMUST00000129562 (Ncapg-004) 45677864-45680026 retained_intron
ENSMUST00000134090 (Ncapg-003) 45692050-45696930 retained_intron
ENSMUST00000134309 (Ncapg-002) 45676013-45700125 retained_intron
ENSMUSG00000015882 (Lcorl)
ligand dependent nuclear receptor corepressor-like 		ENSMUST00000016026 (Lcorl-002) 45730332-45857499 protein_coding
ENSMUST00000045586 (Lcorl-001) 45697181-45857615 protein_coding
ENSMUST00000067997 (Lcorl-003) 45773322-45857501 protein_coding
ENSMUST00000087164 (Lcorl-005) 45730335-45856551 protein_coding
ENSMUST00000121573 (Lcorl-004) 45700450-45856552 protein_coding
ENSMUST00000156295 (Lcorl-006) 45775259-45857615 retained_intron
ENSMUST00000186633 (Lcorl-008) 45747284-45857497 nonsense_mediated_decay
ENSMUST00000187615 (Lcorl-009) 45747276-45857481 nonsense_mediated_decay
ENSMUST00000189859 (Lcorl-010) 45747255-45857479 protein_coding
ENSMUST00000190036 (Lcorl-007) 45699291-45857498 protein_coding
ENSMUSG00000031558 (Slit2)
slit homolog 2 (Drosophila) 		ENSMUST00000033967 (Slit2-003) 47983155-48304396 nonsense_mediated_decay
ENSMUST00000170109 (Slit2-001) 47984793-48306282 protein_coding
ENSMUST00000172484 (Slit2-005) 48231492-48282948 retained_intron
ENSMUST00000172493 (Slit2-014) 48242549-48259597 protein_coding
ENSMUST00000172561 (Slit2-015) 48256573-48259551 retained_intron
ENSMUST00000172824 (Slit2-013) 48223471-48238452 processed_transcript
ENSMUST00000172998 (Slit2-020) 47983155-48183157 retained_intron
ENSMUST00000173107 (Slit2-008) 47984811-48304522 protein_coding
ENSMUST00000173303 (Slit2-012) 48182104-48189530 retained_intron
ENSMUST00000173646 (Slit2-017) 48275243-48281799 retained_intron
ENSMUST00000173671 (Slit2-004) 48248644-48262665 processed_transcript
ENSMUST00000173686 (Slit2-018) 48281778-48302505 nonsense_mediated_decay
ENSMUST00000173702 (Slit2-007) 47984811-48304522 protein_coding
ENSMUST00000173774 (Slit2-011) 48169193-48192209 processed_transcript
ENSMUST00000173926 (Slit2-010) 47984994-48173193 processed_transcript
ENSMUST00000174061 (Slit2-019) 47983155-47990332 retained_intron
ENSMUST00000174313 (Slit2-002) 47984571-48304956 protein_coding
ENSMUST00000174421 (Slit2-006) 47984811-48304522 protein_coding
ENSMUST00000174487 (Slit2-016) 48189467-48230121 processed_transcript
ENSMUST00000174658 (Slit2-009) 47987842-48189592 nonsense_mediated_decay
ENSMUSG00000065603 (Mir218-1)
microRNA 218-1 		ENSMUST00000083669 (Mir218-1-201) 48223942-48224051 miRNA
ENSMUSG00000067321 (Gm7931)
predicted pseudogene 7931 		ENSMUST00000121537 (Gm7931-001) 46414344-46414616 processed_pseudogene
ENSMUSG00000092309 (4930518C09Rik)
RIKEN cDNA 4930518C09 gene 		ENSMUST00000172700 (4930518C09Rik-001) 48003066-48005707 processed_transcript
ENSMUSG00000092559 (Gm20475)
predicted gene 20475 		ENSMUST00000174884 (Gm20475-001) 48005784-48007923 processed_transcript
ENSMUSG00000101587 (RP23-7E4.5)
predicted gene 29036 		ENSMUST00000189967 (RP23-7E4.5-001) 45768870-45769664 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OP_0001ENSG00000109805ENST00000251496ENST00000509719ENST00000510063ENST00000513226ENST00000514176ENSG00000145147ENST00000273739ENST00000503823ENST00000503837ENST00000504154ENST00000508541ENST00000508824ENST00000509099ENST00000509394ENST00000509941ENST00000511508ENST00000512993ENST00000622093ENSG00000178177ENST00000326877ENST00000382224ENST00000382226ENST00000510121ENST00000510451ENST00000512376ENSG00000235413ENST00000505463ENSG00000241612ENST00000488289ENSG00000248228ENST00000515882ENSG00000248238ENST00000505347ENSG00000248515ENST00000511431ENSG00000251048ENST00000503815ENSG00000279379ENST00000623088CIL_0002OP_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002OP_0001ENSG00000109805ENST00000251496ENST00000514176ENSG00000145147ENST00000273739ENST00000503823ENST00000503837ENST00000504154ENST00000508541ENST00000512993ENST00000622093ENSG00000178177ENST00000326877ENST00000382224ENST00000382226ENST00000510451ENSG00000235413ENST00000505463ENSG00000241612ENST00000488289ENSG00000248228ENST00000515882ENSG00000248238ENST00000505347ENSG00000248515ENST00000511431ENSG00000251048ENST00000503815ENSG00000279379ENST00000623088CIL_0002OP_0002ENSMUSG00000015880ENSMUST00000117396ENSMUST00000134090ENSMUSG00000015882ENSMUST00000016026ENSMUST00000045586ENSMUST00000067997ENSMUST00000087164ENSMUST00000121573ENSMUST00000156295ENSMUST00000186633ENSMUST00000187615ENSMUSG00000031558ENSMUST00000033967ENSMUST00000170109ENSMUST00000172484ENSMUST00000172493ENSMUST00000172998ENSMUST00000173107ENSMUST00000173686ENSMUST00000173702ENSMUST00000173926ENSMUST00000174061ENSMUST00000174313ENSMUST00000174421ENSMUSG00000065603ENSMUST00000083669ENSMUSG00000067321ENSMUST00000121537ENSMUSG00000092309ENSMUST00000172700ENSMUSG00000092559ENSMUST00000174884ENSMUSG00000101587ENSMUST00000189967
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109805 ENST00000251496 N/A N/A N/A N/A 0.382±0.00 N/A N/A N/A N/A N/A N/A N/A 0.154±0.00 N/A
ENST00000509719 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514176 N/A N/A N/A N/A 0.610±0.00 1.710±0.00 N/A 0.307±0.00 N/A N/A N/A 2.188±0.85 1.819±1.60 6.373±1.18
ENSG00000145147 ENST00000273739 N/A N/A N/A N/A 2.533±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503823 N/A N/A N/A N/A N/A N/A 0.369±0.00 0.806±0.00 0.079±0.00 2.560±0.00 N/A N/A 4.419±0.00 N/A
ENST00000503837 N/A N/A N/A N/A N/A 0.393±0.00 0.186±0.00 N/A N/A 3.146±0.00 0.961±0.00 0.191±0.00 N/A 0.117±0.00
ENST00000504154 1.488±0.00 2.004±0.00 2.663±0.00 1.864±0.67 3.127±1.56 2.557±1.30 0.801±0.18 1.690±0.00 5.215±0.00 7.958±3.40 N/A 0.365±0.16 3.626±1.77 1.767±1.27
ENST00000508541 N/A N/A N/A N/A N/A N/A N/A 0.277±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509394 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512993 N/A N/A N/A N/A N/A N/A N/A N/A 0.374±0.00 N/A 1.254±0.00 N/A N/A N/A
ENST00000622093 N/A N/A N/A 1.053±0.00 N/A N/A N/A N/A N/A N/A 0.457±0.00 N/A N/A N/A
ENSG00000178177 ENST00000326877 1.248±0.00 0.325±0.00 N/A 0.413±0.11 0.336±0.00 0.611±0.00 0.245±0.02 0.937±0.00 0.448±0.00 0.776±0.00 0.548±0.00 0.527±0.24 0.231±0.00 1.557±0.00
ENST00000382224 0.507±0.00 N/A 1.245±0.00 0.696±0.00 0.883±0.00 1.040±0.65 0.160±0.00 N/A 0.919±0.00 1.492±0.00 0.759±0.00 0.311±0.00 N/A 0.757±0.00
ENST00000382226 N/A 0.598±0.00 N/A 0.334±0.00 0.349±0.17 N/A 0.336±0.00 0.759±0.00 0.244±0.00 0.203±0.00 0.371±0.00 0.620±0.38 0.879±0.59 2.535±1.37
ENST00000510121 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510451 N/A N/A N/A 1.307±0.00 N/A N/A N/A N/A 2.166±0.00 2.524±0.00 1.516±0.00 N/A N/A N/A
ENST00000512376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235413 ENST00000505463 N/A N/A N/A 0.092±0.00 N/A N/A 0.049±0.03 0.065±0.00 N/A 0.064±0.00 N/A 0.067±0.02 N/A 0.024±0.01
ENSG00000241612 ENST00000488289 0.053±0.00 0.246±0.00 N/A 0.081±0.00 0.120±0.07 0.100±0.00 0.026±0.00 N/A 0.146±0.07 0.259±0.00 0.174±0.00 0.323±0.40 0.397±0.04 0.049±0.00
ENSG00000248228 ENST00000515882 N/A 0.123±0.00 N/A 0.106±0.00 N/A N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A 8.433±1.47
ENSG00000248238 ENST00000505347 0.023±0.00 0.093±0.00 N/A 0.051±0.00 0.047±0.00 N/A 0.108±0.00 0.047±0.00 0.021±0.00 0.163±0.00 0.041±0.00 0.075±0.00 0.096±0.00 0.131±0.00
ENSG00000248515 ENST00000511431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.035±0.00 0.088±0.00 0.148±0.03
ENSG00000251048 ENST00000503815 0.126±0.00 0.102±0.00 N/A 0.133±0.00 0.050±0.00 0.279±0.00 0.272±0.00 0.125±0.00 0.085±0.00 0.087±0.00 0.108±0.00 0.044±0.00 N/A 0.082±0.01
ENSG00000279379 ENST00000623088 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.135±0.00 0.026±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000015880 ENSMUST00000117396 0.692±0.00 0.401±0.07 N/A 3.998±0.37 0.479±0.07 1.029±0.35 N/A N/A 5.337±0.00 0.360±0.08 N/A 1.976±1.17 5.987±4.56 6.559±3.65
ENSMUST00000123396 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000129562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134090 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.677±0.00 N/A N/A
ENSMUST00000134309 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000015882 ENSMUST00000016026 0.305±0.14 N/A 0.769±0.35 2.067±1.02 0.337±0.07 0.811±0.10 0.200±0.02 0.273±0.10 0.281±0.05 0.657±0.04 0.352±0.08 1.280±0.45 0.598±0.50 2.575±0.00
ENSMUST00000045586 0.548±0.00 0.504±0.16 0.373±0.08 4.346±3.00 0.485±0.15 0.549±0.11 0.077±0.01 0.426±0.01 1.074±0.79 0.503±0.11 0.125±0.04 0.896±0.45 0.146±0.00 0.909±0.08
ENSMUST00000067997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.776±0.00 N/A N/A
ENSMUST00000087164 0.421±0.00 0.424±0.04 N/A N/A 0.527±0.09 N/A N/A 0.149±0.00 N/A 0.266±0.00 N/A 1.233±0.48 N/A 2.513±0.49
ENSMUST00000121573 N/A 0.503±0.00 N/A 0.591±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156295 N/A 1.512±0.43 N/A N/A 0.634±0.11 1.919±0.82 N/A 1.422±0.00 0.889±0.00 1.264±0.09 N/A 1.715±0.25 N/A N/A
ENSMUST00000186633 N/A 1.068±0.00 N/A N/A N/A 2.236±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000187615 N/A N/A N/A N/A N/A N/A N/A N/A 1.253±0.00 1.119±0.00 N/A N/A N/A N/A
ENSMUST00000189859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000031558 ENSMUST00000033967 0.380±0.17 0.455±0.39 0.388±0.03 1.783±0.00 1.582±0.47 0.501±0.23 0.443±0.20 1.160±0.50 0.078±0.01 3.073±0.53 0.026±0.01 1.242±0.81 0.387±0.24 0.121±0.06
ENSMUST00000170109 N/A 0.885±0.40 0.790±0.28 N/A 0.819±0.16 N/A 0.245±0.01 0.867±0.19 N/A 2.600±0.00 0.026±0.01 1.705±0.74 0.439±0.28 0.084±0.00
ENSMUST00000172484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A N/A
ENSMUST00000172493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.289±0.00 N/A
ENSMUST00000172561 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172824 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172998 N/A N/A N/A N/A N/A 0.227±0.00 N/A N/A N/A 2.728±0.00 N/A N/A N/A N/A
ENSMUST00000173107 0.124±0.00 N/A N/A N/A N/A N/A 0.325±0.00 N/A 0.055±0.04 1.496±0.00 N/A 0.956±0.00 N/A 0.134±0.00
ENSMUST00000173303 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173671 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173686 N/A N/A N/A N/A N/A N/A N/A N/A 0.081±0.00 N/A 0.269±0.06 N/A N/A N/A
ENSMUST00000173702 N/A N/A N/A N/A N/A N/A N/A N/A 0.028±0.02 N/A N/A N/A N/A N/A
ENSMUST00000173774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173926 N/A N/A N/A N/A N/A N/A N/A N/A 0.085±0.00 N/A N/A N/A N/A N/A
ENSMUST00000174061 N/A 1.379±0.66 N/A N/A 1.585±0.00 0.636±0.14 0.265±0.00 N/A 0.011±0.00 N/A N/A 1.357±0.36 N/A 0.205±0.00
ENSMUST00000174313 0.253±0.09 0.418±0.00 1.090±0.24 3.534±1.16 1.522±0.84 0.339±0.04 0.285±0.01 1.383±0.32 0.117±0.04 1.755±0.00 0.031±0.01 1.172±0.38 0.406±0.25 0.115±0.03
ENSMUST00000174421 N/A N/A N/A N/A N/A N/A N/A N/A 0.004±0.00 N/A N/A N/A N/A N/A
ENSMUST00000174487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065603 ENSMUST00000083669 N/A N/A N/A 35.166±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000067321 ENSMUST00000121537 N/A N/A N/A N/A N/A N/A N/A N/A 0.294±0.20 N/A N/A N/A N/A 0.499±0.20
ENSMUSG00000092309 ENSMUST00000172700 N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A 0.026±0.01 0.160±0.00 N/A N/A 0.130±0.01 0.597±0.30
ENSMUSG00000092559 ENSMUST00000174884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.207±1.16
ENSMUSG00000101587 ENSMUST00000189967 0.140±0.05 N/A 0.075±0.05 0.166±0.08 0.132±0.04 0.347±0.17 N/A 0.201±0.09 0.075±0.03 0.162±0.00 0.056±0.00 0.311±0.22 0.096±0.04 0.145±0.05

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