C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein kinase C and casein kinase substrate in neurons 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000016664 Pacsin2 10090 - 15:83375607-83464606 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000056177 Pacsin2-201 83376122-83464570 protein_coding
  ENSMUST00000165095 Pacsin2-202 83375607-83432850 protein_coding
  ENSMUST00000171436 Pacsin2-203 83375607-83464606 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056177ENSMUST00000165095ENSMUST00000171436
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056177 4.121±0.00 4.024±0.00 5.234±0.00 8.585±6.84 3.828±0.47 7.293±0.70 9.181±0.00 10.096±1.12 6.926±4.22 9.584±2.77 2.042±0.13 28.415±15.24 39.146±24.20 13.339±2.83
ENSMUST00000165095 N/A 3.063±0.00 N/A N/A 2.741±0.00 N/A 13.756±3.76 6.110±0.30 3.759±2.34 N/A 2.097±0.47 4.258±1.22 N/A N/A
ENSMUST00000171436 9.876±6.57 6.898±0.38 5.151±0.00 6.224±5.97 4.753±1.88 13.149±5.24 8.301±0.00 16.624±8.00 10.616±8.66 10.362±2.80 2.150±1.40 10.323±5.22 21.312±8.77 6.830±2.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0004U5 CIL_0004U5_0002 CGP 15:83299740-83464606
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004LJ CIL_0004LJ_0002 CGP 15:83375607-83510893

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0005901 IDA caveola
GO:0005911 IDA cell-cell junction
GO:0005925 IEA focal adhesion
GO:0007165 TAS signal transduction
GO:0008092 IDA cytoskeletal protein binding
GO:0008289 IDA lipid binding
GO:0019898 IDA extrinsic component of membrane
GO:0030036 IEA actin cytoskeleton organization
GO:0031410 IEA cytoplasmic vesicle
GO:0036010 IEA protein localization to endosome
GO:0042802 IEA identical protein binding
GO:0042995 IEA cell projection
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045806 IDA negative regulation of endocytosis
GO:0048858 IMP cell projection morphogenesis
GO:0055038 IEA recycling endosome membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0070300 ISS phosphatidic acid binding
GO:0070836 ISS caveola assembly
GO:0072584 ISS caveolin-mediated endocytosis
GO:0097320 IMP membrane tubulation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078014 pacsin2 protein kinase C and casein kinase substrate in neurons 2 protein_coding Danio_rerio
ENSG00000100266 PACSIN2 protein kinase C and casein kinase substrate in neurons 2 protein_coding Homo_sapiens

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