C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protein kinase C and casein kinase substrate in neurons 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000100266 PACSIN2 9606 - 22:42835412-43015145 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000263246 PACSIN2-001 42869771-43015145 protein_coding
  ENST00000337959 PACSIN2-201 42869768-42947041 protein_coding
  ENST00000402229 PACSIN2-004 42871128-42959878 protein_coding
  ENST00000403744 PACSIN2-005 42870930-42947041 protein_coding
  ENST00000407585 PACSIN2-003 42869775-42959881 protein_coding
  ENST00000418133 PACSIN2-009 42890944-42945873 protein_coding
  ENST00000422336 PACSIN2-006 42890944-43002440 protein_coding
  ENST00000445706 PACSIN2-010 42893457-43015098 nonsense_mediated_decay
  ENST00000453079 PACSIN2-008 42893574-42959899 protein_coding
  ENST00000453643 PACSIN2-007 42890935-43015135 protein_coding
  ENST00000507586 PACSIN2-015 42835412-42876207 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000263246ENST00000337959ENST00000402229
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000263246 17.664±0.00 14.291±0.00 4.468±0.00 7.261±6.21 10.231±6.07 17.867±9.60 9.572±7.46 38.832±0.00 5.729±1.72 30.905±0.00 7.752±0.00 29.948±27.74 40.128±11.65 22.526±3.41
ENST00000337959 N/A N/A N/A N/A N/A 3.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000402229 N/A N/A N/A N/A 4.842±0.00 N/A 1.495±0.00 N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040L CIL_00040L_0001 CGP 22:42692121-42858106
CIL_0004U5 CIL_0004U5_0001 CGP 22:42796502-43015145
CIL_0008LG CIL_0008LG_0001 VISTA 22:42800321-43401810
CIL_0004LJ CIL_0004LJ_0001 CGP 22:42835412-43089428

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0005901 IDA caveola
GO:0005911 IEA cell-cell junction
GO:0005925 IDA focal adhesion
GO:0008092 IEA cytoskeletal protein binding
GO:0008289 IEA lipid binding
GO:0019898 ISS extrinsic component of membrane
GO:0030036 IEA actin cytoskeleton organization
GO:0031410 IEA cytoplasmic vesicle
GO:0036010 IMP protein localization to endosome
GO:0042802 IPI identical protein binding
GO:0042995 IEA cell projection
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045806 IEA negative regulation of endocytosis
GO:0048858 ISS cell projection morphogenesis
GO:0055038 IDA recycling endosome membrane
GO:0070062 IDA extracellular vesicular exosome
GO:0070300 IDA phosphatidic acid binding
GO:0070836 IEA:IMP caveola assembly
GO:0072584 IMP caveolin-mediated endocytosis
GO:0097320 ISS membrane tubulation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078014 pacsin2 protein kinase C and casein kinase substrate in neurons 2 protein_coding Danio_rerio
ENSMUSG00000016664 Pacsin2 protein kinase C and casein kinase substrate in neurons 2 protein_coding Mus_musculus

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