C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C and casein kinase substrate in neurons 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171436 Pacsin2-203 ENSMUSG00000016664 10090 - 15:83375607-83464606 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171436
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171436 9.876±6.57 6.898±0.38 5.151±0.00 6.224±5.97 4.753±1.88 13.149±5.24 8.301±0.00 16.624±8.00 10.616±8.66 10.362±2.80 2.150±1.40 10.323±5.22 21.312±8.77 6.830±2.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LG CIL_0008LG_0002 VISTA 15:83223007-83824071
CIL_0004U5 CIL_0004U5_0002 CGP 15:83299740-83464606
CIL_0008W4 CIL_0008W4_0002 VISTA 15:83338828-83940718
CIL_0004LJ CIL_0004LJ_0002 CGP 15:83375607-83510893

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IDA cytosol
GO:0005856 IEA cytoskeleton
GO:0005901 IDA caveola
GO:0005911 IDA cell-cell junction
GO:0007165 TAS signal transduction
GO:0008092 IDA cytoskeletal protein binding
GO:0008289 IDA lipid binding
GO:0019898 IDA extrinsic component of membrane
GO:0030036 IEA actin cytoskeleton organization
GO:0031410 IEA cytoplasmic vesicle
GO:0042995 IEA cell projection
GO:0045806 IDA negative regulation of endocytosis
GO:0048858 IMP cell projection morphogenesis
GO:0070300 ISS phosphatidic acid binding
GO:0070836 ISS caveola assembly
GO:0072584 ISS caveolin-mediated endocytosis
GO:0097320 IMP membrane tubulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000092415 pacsin2-201 protein_coding Danio_rerio 0 484
ENSDART00000148728 pacsin2-001 protein_coding Danio_rerio 0 484
ENSDART00000149305 pacsin2-004 protein_coding Danio_rerio 1e-31 143
ENSDART00000150099 pacsin2-002 retained_intron Danio_rerio 4e-27 128
ENST00000244458 PACSIN1-001 protein_coding Homo_sapiens 0 497
ENST00000263246 PACSIN2-001 protein_coding Homo_sapiens 0 1818
ENST00000337959 PACSIN2-201 protein_coding Homo_sapiens 0 1303
ENST00000374043 PACSIN1-003 protein_coding Homo_sapiens 0 497
ENST00000402229 PACSIN2-004 protein_coding Homo_sapiens 0 1818
ENST00000403744 PACSIN2-005 protein_coding Homo_sapiens 0 1818
ENST00000407585 PACSIN2-003 protein_coding Homo_sapiens 0 1303
ENST00000418133 PACSIN2-009 protein_coding Homo_sapiens 0 625
ENST00000422336 PACSIN2-006 protein_coding Homo_sapiens 0 625
ENST00000453079 PACSIN2-008 protein_coding Homo_sapiens 7e-32 141
ENST00000453643 PACSIN2-007 protein_coding Homo_sapiens 0 625
ENST00000538621 PACSIN1-201 protein_coding Homo_sapiens 0 497
ENST00000620693 PACSIN1-202 protein_coding Homo_sapiens 0 497

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