C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TOX high mobility group box family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152493 Tox4-002 ENSMUSG00000016831 10090 + 14:52279565-52292357 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartKidneyLiverLungOvaryTestisENSMUST00000152493
Transcript ID Adipose Adrenal Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000152493 10.830±5.05 23.808±2.48 10.666±2.07 5.540±0.78 7.514±1.07 7.747±0.71 16.391±2.57 25.504±10.10 8.767±1.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JD CIL_0003JD_0002 CGP 14:52198151-52279545
CIL_0008CX CIL_0008CX_0002 VISTA 14:52247406-52849170
CIL_0005QL CIL_0005QL_0002 CGP 14:52261759-52296391
CIL_0002HL CIL_0002HL_0002 CGP 14:52279146-52305128

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000416256 TOX4-011 protein_coding Homo_sapiens 0 501
ENST00000447695 TOX4-004 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000448790 TOX4-201 protein_coding Homo_sapiens 0 1170
ENST00000455138 TOX4-007 nonsense_mediated_decay Homo_sapiens 0 398
ENST00000455393 TOX4-003 nonsense_mediated_decay Homo_sapiens 0 1170
ENST00000457430 TOX4-005 protein_coding Homo_sapiens 0 401
ENST00000463119 TOX4-010 retained_intron Homo_sapiens 0 416
ENST00000473176 TOX4-009 retained_intron Homo_sapiens 0 414
ENST00000487242 TOX4-008 retained_intron Homo_sapiens 0 503
ENST00000494242 TOX4-006 processed_transcript Homo_sapiens 0 580
ENST00000514955 TOX4P1-001 processed_pseudogene Homo_sapiens 0 1031
ENST00000613005 TOX4-002 retained_intron Homo_sapiens 0 1170
ENST00000613569 TOX4-001 protein_coding Homo_sapiens 0 1170

Loading