C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TOX high mobility group box family member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022766 Tox4-001 ENSMUSG00000016831 10090 + 14:52279146-52296391 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022766
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022766 10.107±4.79 9.713±2.36 12.247±0.32 14.381±3.52 11.960±5.66 9.056±2.41 6.525±1.14 9.370±1.94 7.670±2.32 12.073±3.55 8.996±2.12 10.742±4.84 10.511±2.79 12.489±3.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JD CIL_0003JD_0002 CGP 14:52198151-52279545
CIL_0008CX CIL_0008CX_0002 VISTA 14:52247406-52849170
CIL_0005QL CIL_0005QL_0002 CGP 14:52261759-52296391
CIL_0002HL CIL_0002HL_0002 CGP 14:52279146-52305128

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 ISS chromatin
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0072357 ISS PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000003940 rab2a-001 protein_coding Danio_rerio 0.0000006 62
ENST00000298717 METTL3-001 protein_coding Homo_sapiens 0 191
ENST00000396522 METTL3-008 retained_intron Homo_sapiens 0 215
ENST00000416256 TOX4-011 protein_coding Homo_sapiens 0 870
ENST00000447695 TOX4-004 nonsense_mediated_decay Homo_sapiens 0 689
ENST00000448790 TOX4-201 protein_coding Homo_sapiens 0 2453
ENST00000455138 TOX4-007 nonsense_mediated_decay Homo_sapiens 0 628
ENST00000455393 TOX4-003 nonsense_mediated_decay Homo_sapiens 0 1912
ENST00000457430 TOX4-005 protein_coding Homo_sapiens 0 771
ENST00000463119 TOX4-010 retained_intron Homo_sapiens 0 416
ENST00000473176 TOX4-009 retained_intron Homo_sapiens 0 826
ENST00000487242 TOX4-008 retained_intron Homo_sapiens 0 503
ENST00000494242 TOX4-006 processed_transcript Homo_sapiens 0 531
ENST00000514955 TOX4P1-001 processed_pseudogene Homo_sapiens 0 2076
ENST00000537163 METTL3-003 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000539760 METTL3-010 nonsense_mediated_decay Homo_sapiens 0 191
ENST00000543235 METTL3-006 nonsense_mediated_decay Homo_sapiens 0 215
ENST00000544248 METTL3-004 nonsense_mediated_decay Homo_sapiens 3.9937e-43 180
ENST00000544500 METTL3-009 retained_intron Homo_sapiens 0 191
ENST00000613005 TOX4-002 retained_intron Homo_sapiens 0 1786
ENST00000613569 TOX4-001 protein_coding Homo_sapiens 0 2453

Loading