C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytokine receptor-like factor 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000017561 Crlf3 10090 - 11:80046493-80080991 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000061283 Crlf3-001 80046493-80080991 protein_coding
  ENSMUST00000092858 Crlf3-003 80056095-80080936 processed_transcript
  ENSMUST00000103233 Crlf3-002 80046493-80080938 protein_coding
  ENSMUST00000147164 Crlf3-004 80056217-80057899 retained_intron
  ENSMUST00000177825 Crlf3-006 80047481-80080912 nonsense_mediated_decay
  ENSMUST00000178280 Crlf3-005 80062684-80080938 retained_intron
  ENSMUST00000178893 Crlf3-007 80047481-80080929 nonsense_mediated_decay
  ENSMUST00000179855 Crlf3-008 80059312-80080861 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061283ENSMUST00000092858ENSMUST00000103233ENSMUST00000177825ENSMUST00000178893ENSMUST00000179855
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061283 5.328±0.14 2.085±0.27 5.693±0.65 3.356±0.91 12.495±3.34 3.585±0.86 3.239±0.63 3.817±1.16 17.921±16.68 14.740±0.76 0.606±0.63 5.841±1.63 10.139±3.00 2.438±0.34
ENSMUST00000092858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.737±0.27 N/A N/A N/A
ENSMUST00000103233 N/A N/A N/A 0.576±0.00 N/A N/A N/A N/A 4.841±2.49 2.204±0.00 0.330±0.04 2.139±0.58 2.783±0.00 0.870±0.05
ENSMUST00000177825 N/A N/A N/A 3.229±0.00 N/A N/A N/A N/A N/A N/A N/A 8.491±0.00 7.219±0.00 2.946±0.00
ENSMUST00000178893 N/A N/A N/A 7.187±0.00 8.086±0.00 N/A 1.184±0.00 N/A N/A N/A 0.777±0.17 6.894±1.65 11.348±4.94 2.846±0.00
ENSMUST00000179855 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 42.919±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000141 CIL_000141_0002 CGP 11:80046493-80135794

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000082 ISS G1/S transition of mitotic cell cycle
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0030308 ISS negative regulation of cell growth
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0046427 ISS positive regulation of JAK-STAT cascade
GO:0071158 ISS positive regulation of cell cycle arrest

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070261 crlf3 cytokine receptor-like factor 3 protein_coding Danio_rerio
ENSG00000176390 CRLF3 cytokine receptor-like factor 3 protein_coding Homo_sapiens

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