C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: START domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018167 Stard3 10090 + 11:98358368-98381112 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018311 Stard3-001 98358368-98381099 protein_coding
  ENSMUST00000130323 Stard3-006 98375520-98378648 processed_transcript
  ENSMUST00000143243 Stard3-007 98378156-98379348 processed_transcript
  ENSMUST00000148738 Stard3-004 98376447-98378229 processed_transcript
  ENSMUST00000152559 Stard3-003 98358444-98376835 processed_transcript
  ENSMUST00000154960 Stard3-002 98358431-98381112 processed_transcript
  ENSMUST00000155063 Stard3-005 98358430-98376830 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018311ENSMUST00000143243ENSMUST00000154960ENSMUST00000155063
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018311 15.485±1.29 15.496±1.87 12.364±2.78 15.347±8.97 16.675±2.69 36.660±3.13 9.278±2.74 21.664±3.30 12.240±1.09 34.355±4.81 7.208±1.07 22.788±7.32 15.055±7.66 6.737±3.54
ENSMUST00000143243 10.747±0.96 11.613±0.45 N/A 15.722±9.44 16.034±2.12 33.188±3.11 8.193±1.98 N/A 6.516±0.79 24.942±3.81 N/A 18.062±6.35 5.374±0.00 N/A
ENSMUST00000154960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00
ENSMUST00000155063 N/A 10.803±3.02 N/A N/A 15.271±2.02 22.278±3.39 N/A N/A N/A N/A N/A 16.379±2.85 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0000TI CIL_0000TI_0003 CGP 11:98348404-98381112
CIL_00023N CIL_00023N_0002 CGP 11:98358368-98384953

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005739 IDA mitochondrion
GO:0005765 IEA lysosomal membrane
GO:0005768 IDA endosome
GO:0005770 TAS late endosome
GO:0006701 IMP progesterone biosynthetic process
GO:0006869 IEA lipid transport
GO:0015485 IEA cholesterol binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017809 stard3 START domain containing 3 protein_coding Danio_rerio
ENSG00000131748 STARD3 StAR-related lipid transfer (START) domain containing 3 protein_coding Homo_sapiens

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