C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000TI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076280-ENSDARG00000017809 CGP 7955 19:5537231-5610199
GeneTranscriptPositionBiotype
ENSDARG00000017809 (stard3)
START domain containing 3 		ENSDART00000003634 (stard3-001) 5593150-5610199 protein_coding
ENSDART00000134808 (stard3-002) 5593265-5597368 protein_coding
ENSDARG00000076280 (ppp1r1b)
protein phosphatase 1, regulatory (inhibitor) subunit 1B 		ENSDART00000101658 (ppp1r1b-201) 5537231-5582870 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0000TI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000131771-ENSG00000131748 CGP 9606 17:39626740-39663484
GeneTranscriptPositionBiotype
ENSG00000131748 (STARD3)
StAR-related lipid transfer (START) domain containing 3 		ENST00000336308 (STARD3-001) 39637065-39663484 protein_coding
ENST00000394250 (STARD3-008) 39637144-39663434 protein_coding
ENST00000443521 (STARD3-002) 39653125-39658762 protein_coding
ENST00000460894 (STARD3-005) 39653500-39658001 processed_transcript
ENST00000471896 (STARD3-007) 39658989-39663469 retained_intron
ENST00000481171 (STARD3-006) 39657911-39663484 retained_intron
ENST00000484773 (STARD3-004) 39653049-39658693 retained_intron
ENST00000488876 (STARD3-003) 39653098-39663484 retained_intron
ENST00000544210 (STARD3-012) 39637141-39663094 protein_coding
ENST00000577248 (STARD3-030) 39637147-39658458 protein_coding
ENST00000578232 (STARD3-015) 39637090-39659553 processed_transcript
ENST00000578254 (STARD3-019) 39637140-39657798 processed_transcript
ENST00000578384 (STARD3-027) 39660220-39662479 retained_intron
ENST00000578577 (STARD3-011) 39637142-39663007 nonsense_mediated_decay
ENST00000578686 (STARD3-026) 39660286-39661321 retained_intron
ENST00000579479 (STARD3-021) 39637147-39657810 protein_coding
ENST00000580331 (STARD3-017) 39652489-39657052 protein_coding
ENST00000580551 (STARD3-022) 39637139-39657887 retained_intron
ENST00000580611 (STARD3-013) 39637153-39663484 protein_coding
ENST00000581894 (STARD3-020) 39637142-39657833 protein_coding
ENST00000582874 (STARD3-024) 39653535-39658776 processed_transcript
ENST00000583419 (STARD3-018) 39652778-39658460 protein_coding
ENST00000583582 (STARD3-010) 39637142-39658819 retained_intron
ENST00000583639 (STARD3-028) 39660196-39662896 processed_transcript
ENST00000583718 (STARD3-016) 39637370-39657830 protein_coding
ENST00000583884 (STARD3-025) 39659064-39662321 nonsense_mediated_decay
ENST00000584850 (STARD3-009) 39658446-39663469 retained_intron
ENST00000585214 (STARD3-023) 39637162-39658296 processed_transcript
ENST00000585269 (STARD3-014) 39658394-39663433 retained_intron
ENSG00000131771 (PPP1R1B)
protein phosphatase 1, regulatory (inhibitor) subunit 1B 		ENST00000254079 (PPP1R1B-001) 39626924-39636626 protein_coding
ENST00000394265 (PPP1R1B-005) 39628498-39636625 protein_coding
ENST00000394267 (PPP1R1B-002) 39628498-39636626 protein_coding
ENST00000492037 (PPP1R1B-006) 39629405-39636624 retained_intron
ENST00000579000 (PPP1R1B-008) 39627200-39636622 protein_coding
ENST00000580029 (PPP1R1B-007) 39632138-39636625 retained_intron
ENST00000580772 (PPP1R1B-011) 39628526-39630452 retained_intron
ENST00000580825 (PPP1R1B-013) 39626740-39636000 protein_coding
ENST00000582680 (PPP1R1B-014) 39626952-39634084 protein_coding
ENST00000583446 (PPP1R1B-012) 39629374-39635721 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0000TI_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000061718-ENSMUSG00000018167 CGP 10090 11:98348404-98381112
GeneTranscriptPositionBiotype
ENSMUSG00000018167 (Stard3)
START domain containing 3 		ENSMUST00000018311 (Stard3-001) 98358368-98381099 protein_coding
ENSMUST00000130323 (Stard3-006) 98375520-98378648 processed_transcript
ENSMUST00000143243 (Stard3-007) 98378156-98379348 processed_transcript
ENSMUST00000148738 (Stard3-004) 98376447-98378229 processed_transcript
ENSMUST00000152559 (Stard3-003) 98358444-98376835 processed_transcript
ENSMUST00000154960 (Stard3-002) 98358431-98381112 processed_transcript
ENSMUST00000155063 (Stard3-005) 98358430-98376830 processed_transcript
ENSMUSG00000061718 (Ppp1r1b)
protein phosphatase 1, regulatory (inhibitor) subunit 1B 		ENSMUST00000078694 (Ppp1r1b-001) 98348404-98357796 protein_coding
ENSMUST00000132443 (Ppp1r1b-005) 98350855-98357788 retained_intron
ENSMUST00000133700 (Ppp1r1b-007) 98351489-98357286 processed_transcript
ENSMUST00000137634 (Ppp1r1b-006) 98349996-98357794 protein_coding
ENSMUST00000147415 (Ppp1r1b-003) 98351215-98357391 retained_intron
ENSMUST00000150762 (Ppp1r1b-002) 98349996-98357794 protein_coding
ENSMUST00000152525 (Ppp1r1b-004) 98354596-98357103 processed_transcript
ENSMUSG00000085944 (1700003D09Rik)
RIKEN cDNA 1700003D09 gene 		ENSMUST00000141929 (1700003D09Rik-001) 98350718-98358283 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TI_0001ENSDARG00000017809ENSDART00000003634ENSDART00000134808ENSDARG00000076280ENSDART00000101658CIL_0000TI_0002ENSG00000131748ENST00000336308ENST00000394250ENST00000443521ENST00000460894ENST00000471896ENST00000481171ENST00000484773ENST00000488876ENST00000544210ENST00000577248ENST00000578232ENST00000578254ENST00000578384ENST00000578577ENST00000578686ENST00000579479ENST00000580331ENST00000580551ENST00000580611ENST00000581894ENST00000582874ENST00000583419ENST00000583582ENST00000583639ENST00000583718ENST00000583884ENST00000584850ENST00000585214ENST00000585269ENSG00000131771ENST00000254079ENST00000394265ENST00000394267ENST00000492037ENST00000579000ENST00000580029ENST00000580772ENST00000580825ENST00000582680ENST00000583446CIL_0000TI_0003ENSMUSG00000018167ENSMUST00000018311ENSMUST00000130323ENSMUST00000143243ENSMUST00000148738ENSMUST00000152559ENSMUST00000154960ENSMUST00000155063ENSMUSG00000061718ENSMUST00000078694ENSMUST00000132443ENSMUST00000133700ENSMUST00000137634ENSMUST00000147415ENSMUST00000150762ENSMUST00000152525ENSMUSG00000085944ENSMUST00000141929
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000TI_0001ENSDARG00000017809ENSDART00000003634ENSDART00000134808ENSDARG00000076280ENSDART00000101658CIL_0000TI_0002ENSG00000131748ENST00000336308ENST00000394250ENST00000481171ENST00000488876ENST00000544210ENST00000577248ENST00000578232ENST00000578577ENST00000580611ENST00000584850ENST00000585269ENSG00000131771ENST00000254079ENST00000394265ENST00000394267ENST00000492037ENST00000579000ENST00000580029ENST00000580772ENST00000580825ENST00000582680ENST00000583446CIL_0000TI_0003ENSMUSG00000018167ENSMUST00000018311ENSMUST00000143243ENSMUST00000154960ENSMUST00000155063ENSMUSG00000061718ENSMUST00000078694ENSMUST00000132443ENSMUST00000137634ENSMUST00000147415ENSMUST00000152525ENSMUSG00000085944ENSMUST00000141929
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017809 ENSDART00000003634 N/A N/A N/A 6.014±2.81 N/A N/A 6.054±1.87 8.707±2.79 0.944±0.00 N/A 2.386±0.00 N/A N/A N/A
ENSDART00000134808 N/A N/A N/A N/A N/A N/A N/A N/A 0.829±0.00 N/A N/A N/A N/A N/A
ENSDARG00000076280 ENSDART00000101658 N/A N/A N/A 6.917±5.19 N/A N/A 0.363±0.29 1.756±0.00 0.132±0.00 N/A 2.350±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000131748 ENST00000336308 6.121±0.00 9.891±0.00 N/A 8.502±0.00 6.761±0.00 4.600±0.00 2.065±0.00 4.489±0.00 5.852±0.00 6.978±0.00 N/A 14.711±8.34 19.101±7.95 10.585±1.50
ENST00000394250 8.847±0.00 N/A N/A 6.669±0.00 N/A N/A 2.955±0.00 N/A 2.454±0.00 4.690±0.00 4.784±0.00 N/A N/A 4.317±0.00
ENST00000443521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481171 N/A 2.242±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484773 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488876 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.385±0.00 N/A 7.321±0.00 N/A N/A
ENST00000544210 N/A N/A N/A N/A N/A 5.738±0.00 0.221±0.00 N/A N/A 1.149±0.00 N/A 8.789±0.00 12.043±0.00 12.363±0.00
ENST00000577248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.607±0.00 N/A N/A N/A
ENST00000578232 N/A N/A 2.152±0.00 3.165±0.00 N/A N/A N/A N/A N/A N/A N/A 4.627±0.00 N/A N/A
ENST00000578254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000578577 N/A N/A 1.112±0.00 1.469±0.00 N/A 1.957±0.00 2.161±1.72 N/A N/A 1.400±0.00 N/A 9.664±7.58 14.146±0.00 22.123±0.00
ENST00000578686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000579479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580551 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000580611 N/A 4.483±0.00 0.356±0.00 N/A 4.502±0.00 4.029±0.00 N/A 3.657±1.01 N/A 6.153±0.00 N/A 1.408±0.00 N/A N/A
ENST00000581894 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000582874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583718 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000583884 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000584850 N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A 3.420±0.00 N/A N/A N/A N/A
ENST00000585214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000585269 N/A 6.981±0.00 N/A N/A 5.333±0.00 4.620±0.00 N/A 6.214±0.00 3.135±0.00 N/A 3.666±2.35 N/A N/A 7.291±0.00
ENSG00000131771 ENST00000254079 11.305±0.00 N/A N/A 85.769±68.40 28.022±26.93 15.393±9.19 0.529±0.00 2.526±0.00 N/A 16.267±0.00 N/A 14.869±0.00 N/A 5.621±0.00
ENST00000394265 N/A N/A N/A N/A N/A N/A N/A 1.483±0.00 N/A N/A 0.303±0.00 1.417±0.55 0.150±0.00 3.868±0.00
ENST00000394267 N/A N/A N/A N/A N/A 6.043±0.00 N/A N/A N/A N/A N/A 0.688±0.26 N/A 0.957±0.00
ENST00000492037 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A N/A N/A N/A 0.614±0.00 N/A N/A
ENST00000579000 7.437±0.00 0.370±0.00 N/A N/A 0.998±0.00 18.855±0.00 0.108±0.00 2.975±0.00 0.311±0.00 2.853±2.09 N/A 2.701±0.00 N/A 5.180±4.10
ENST00000580029 N/A N/A N/A N/A 0.250±0.00 N/A 0.025±0.00 N/A 0.238±0.00 N/A N/A 0.303±0.00 N/A N/A
ENST00000580772 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.381±0.00 N/A N/A N/A N/A
ENST00000580825 N/A N/A 0.245±0.00 N/A N/A N/A N/A N/A 0.051±0.00 N/A 0.126±0.00 5.931±0.00 0.201±0.00 N/A
ENST00000582680 N/A N/A N/A N/A N/A N/A N/A N/A 2.976±0.00 N/A 0.438±0.00 N/A N/A 1.528±0.00
ENST00000583446 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.507±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018167 ENSMUST00000018311 15.485±1.29 15.496±1.87 12.364±2.78 15.347±8.97 16.675±2.69 36.660±3.13 9.278±2.74 21.664±3.30 12.240±1.09 34.355±4.81 7.208±1.07 22.788±7.32 15.055±7.66 6.737±3.54
ENSMUST00000130323 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143243 10.747±0.96 11.613±0.45 N/A 15.722±9.44 16.034±2.12 33.188±3.11 8.193±1.98 N/A 6.516±0.79 24.942±3.81 N/A 18.062±6.35 5.374±0.00 N/A
ENSMUST00000148738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00
ENSMUST00000155063 N/A 10.803±3.02 N/A N/A 15.271±2.02 22.278±3.39 N/A N/A N/A N/A N/A 16.379±2.85 N/A N/A
ENSMUSG00000061718 ENSMUST00000078694 0.240±0.16 0.093±0.02 0.049±0.02 15.965±17.04 0.514±0.25 140.255±10.47 3.254±0.88 20.077±3.02 0.149±0.11 8.297±1.14 0.091±0.04 7.440±2.23 0.007±0.00 0.187±0.06
ENSMUST00000132443 0.230±0.18 N/A 0.013±0.00 9.755±9.30 N/A N/A 2.017±0.20 14.592±4.12 1.011±0.80 N/A 0.150±0.02 6.145±4.62 0.146±0.13 0.265±0.14
ENSMUST00000133700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137634 0.286±0.08 N/A N/A N/A 0.504±0.15 N/A N/A N/A N/A N/A 0.168±0.00 2.303±0.82 N/A N/A
ENSMUST00000147415 N/A 0.046±0.00 N/A 67.700±0.00 N/A N/A N/A N/A N/A N/A 0.075±0.00 2.961±0.00 0.009±0.00 N/A
ENSMUST00000150762 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152525 N/A 0.214±0.00 N/A 74.462±0.00 N/A N/A N/A N/A N/A N/A N/A 7.025±0.00 0.019±0.00 1.205±0.00
ENSMUSG00000085944 ENSMUST00000141929 N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.014±0.01 0.222±0.04

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