C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: StAR-related lipid transfer (START) domain containing 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131748 STARD3 9606 + 17:39637065-39663484 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336308 STARD3-001 39637065-39663484 protein_coding
  ENST00000394250 STARD3-008 39637144-39663434 protein_coding
  ENST00000443521 STARD3-002 39653125-39658762 protein_coding
  ENST00000460894 STARD3-005 39653500-39658001 processed_transcript
  ENST00000471896 STARD3-007 39658989-39663469 retained_intron
  ENST00000481171 STARD3-006 39657911-39663484 retained_intron
  ENST00000484773 STARD3-004 39653049-39658693 retained_intron
  ENST00000488876 STARD3-003 39653098-39663484 retained_intron
  ENST00000544210 STARD3-012 39637141-39663094 protein_coding
  ENST00000577248 STARD3-030 39637147-39658458 protein_coding
  ENST00000578232 STARD3-015 39637090-39659553 processed_transcript
  ENST00000578254 STARD3-019 39637140-39657798 processed_transcript
  ENST00000578384 STARD3-027 39660220-39662479 retained_intron
  ENST00000578577 STARD3-011 39637142-39663007 nonsense_mediated_decay
  ENST00000578686 STARD3-026 39660286-39661321 retained_intron
  ENST00000579479 STARD3-021 39637147-39657810 protein_coding
  ENST00000580331 STARD3-017 39652489-39657052 protein_coding
  ENST00000580551 STARD3-022 39637139-39657887 retained_intron
  ENST00000580611 STARD3-013 39637153-39663484 protein_coding
  ENST00000581894 STARD3-020 39637142-39657833 protein_coding
  ENST00000582874 STARD3-024 39653535-39658776 processed_transcript
  ENST00000583419 STARD3-018 39652778-39658460 protein_coding
  ENST00000583582 STARD3-010 39637142-39658819 retained_intron
  ENST00000583639 STARD3-028 39660196-39662896 processed_transcript
  ENST00000583718 STARD3-016 39637370-39657830 protein_coding
  ENST00000583884 STARD3-025 39659064-39662321 nonsense_mediated_decay
  ENST00000584850 STARD3-009 39658446-39663469 retained_intron
  ENST00000585214 STARD3-023 39637162-39658296 processed_transcript
  ENST00000585269 STARD3-014 39658394-39663433 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336308ENST00000394250ENST00000481171ENST00000488876ENST00000544210ENST00000577248ENST00000578232ENST00000578577ENST00000580611ENST00000584850ENST00000585269
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336308 6.121±0.00 9.891±0.00 N/A 8.502±0.00 6.761±0.00 4.600±0.00 2.065±0.00 4.489±0.00 5.852±0.00 6.978±0.00 N/A 14.711±8.34 19.101±7.95 10.585±1.50
ENST00000394250 8.847±0.00 N/A N/A 6.669±0.00 N/A N/A 2.955±0.00 N/A 2.454±0.00 4.690±0.00 4.784±0.00 N/A N/A 4.317±0.00
ENST00000481171 N/A 2.242±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488876 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.385±0.00 N/A 7.321±0.00 N/A N/A
ENST00000544210 N/A N/A N/A N/A N/A 5.738±0.00 0.221±0.00 N/A N/A 1.149±0.00 N/A 8.789±0.00 12.043±0.00 12.363±0.00
ENST00000577248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.607±0.00 N/A N/A N/A
ENST00000578232 N/A N/A 2.152±0.00 3.165±0.00 N/A N/A N/A N/A N/A N/A N/A 4.627±0.00 N/A N/A
ENST00000578577 N/A N/A 1.112±0.00 1.469±0.00 N/A 1.957±0.00 2.161±1.72 N/A N/A 1.400±0.00 N/A 9.664±7.58 14.146±0.00 22.123±0.00
ENST00000580611 N/A 4.483±0.00 0.356±0.00 N/A 4.502±0.00 4.029±0.00 N/A 3.657±1.01 N/A 6.153±0.00 N/A 1.408±0.00 N/A N/A
ENST00000584850 N/A N/A N/A N/A N/A N/A 0.086±0.00 N/A N/A 3.420±0.00 N/A N/A N/A N/A
ENST00000585269 N/A 6.981±0.00 N/A N/A 5.333±0.00 4.620±0.00 N/A 6.214±0.00 3.135±0.00 N/A 3.666±2.35 N/A N/A 7.291±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0001 VISTA 17:39110111-39710718
CIL_00080Z CIL_00080Z_0001 VISTA 17:39318232-39918735
CIL_00098W CIL_00098W_0001 VISTA 17:39359510-39962707
CIL_0007WH CIL_0007WH_0001 VISTA 17:39374871-39978277
CIL_0000TI CIL_0000TI_0002 CGP 17:39626740-39663484
CIL_00023N CIL_00023N_0001 CGP 17:39637065-39666555

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 TAS cytoplasm
GO:0005739 IEA mitochondrion
GO:0005765 IDA lysosomal membrane
GO:0005768 IEA endosome
GO:0006629 TAS lipid metabolic process
GO:0006701 IEA progesterone biosynthetic process
GO:0006839 TAS mitochondrial transport
GO:0006869 IEA lipid transport
GO:0008202 TAS steroid metabolic process
GO:0008203 TAS cholesterol metabolic process
GO:0008289 IEA lipid binding
GO:0015485 IDA cholesterol binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017809 stard3 START domain containing 3 protein_coding Danio_rerio
ENSMUSG00000018167 Stard3 START domain containing 3 protein_coding Mus_musculus

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