C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: START domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018311 Stard3-001 ENSMUSG00000018167 10090 + 11:98358368-98381099 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018311
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018311 15.485±1.29 15.496±1.87 12.364±2.78 15.347±8.97 16.675±2.69 36.660±3.13 9.278±2.74 21.664±3.30 12.240±1.09 34.355±4.81 7.208±1.07 22.788±7.32 15.055±7.66 6.737±3.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008SN CIL_0008SN_0002 VISTA 11:97857859-98458466
CIL_00080Z CIL_00080Z_0002 VISTA 11:98039002-98639485
CIL_00098W CIL_00098W_0002 VISTA 11:98077499-98680383
CIL_0007WH CIL_0007WH_0002 VISTA 11:98091902-98695006
CIL_0000TI CIL_0000TI_0003 CGP 11:98348404-98381112
CIL_00023N CIL_00023N_0002 CGP 11:98358368-98384953

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0005739 IDA mitochondrion
GO:0005765 IEA lysosomal membrane
GO:0005768 IDA endosome
GO:0005770 TAS late endosome
GO:0006701 IMP progesterone biosynthetic process
GO:0006869 IEA lipid transport
GO:0015485 IEA cholesterol binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336308 STARD3-001 protein_coding Homo_sapiens 0 1784
ENST00000394250 STARD3-008 protein_coding Homo_sapiens 0 1134
ENST00000443521 STARD3-002 protein_coding Homo_sapiens 0 763
ENST00000460894 STARD3-005 processed_transcript Homo_sapiens 0 281
ENST00000471896 STARD3-007 retained_intron Homo_sapiens 0 575
ENST00000481171 STARD3-006 retained_intron Homo_sapiens 0 329
ENST00000484773 STARD3-004 retained_intron Homo_sapiens 0 701
ENST00000488876 STARD3-003 retained_intron Homo_sapiens 0 1134
ENST00000544210 STARD3-012 protein_coding Homo_sapiens 0 1602
ENST00000577248 STARD3-030 protein_coding Homo_sapiens 0 529
ENST00000578232 STARD3-015 processed_transcript Homo_sapiens 0 917
ENST00000578254 STARD3-019 processed_transcript Homo_sapiens 0 353
ENST00000578577 STARD3-011 nonsense_mediated_decay Homo_sapiens 0 1134
ENST00000579479 STARD3-021 protein_coding Homo_sapiens 0 407
ENST00000580331 STARD3-017 protein_coding Homo_sapiens 0 340
ENST00000580551 STARD3-022 retained_intron Homo_sapiens 0 534
ENST00000580611 STARD3-013 protein_coding Homo_sapiens 0 1210
ENST00000581894 STARD3-020 protein_coding Homo_sapiens 0 427
ENST00000582874 STARD3-024 processed_transcript Homo_sapiens 0 708
ENST00000583419 STARD3-018 protein_coding Homo_sapiens 0 612
ENST00000583582 STARD3-010 retained_intron Homo_sapiens 0 531
ENST00000583639 STARD3-028 processed_transcript Homo_sapiens 1e-23 113
ENST00000583718 STARD3-016 protein_coding Homo_sapiens 0 424
ENST00000584850 STARD3-009 retained_intron Homo_sapiens 0 575
ENST00000585214 STARD3-023 processed_transcript Homo_sapiens 0 516
ENST00000585269 STARD3-014 retained_intron Homo_sapiens 0 830

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