C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proteasome (prosome, macropain) subunit, beta type 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018286 Psmb6 10090 + 11:70525367-70527858 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018430 Psmb6-001 70525386-70527649 protein_coding
  ENSMUST00000128870 Psmb6-002 70527072-70527858 retained_intron
  ENSMUST00000145503 Psmb6-004 70525367-70526424 retained_intron
  ENSMUST00000148535 Psmb6-003 70526110-70527193 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018430ENSMUST00000128870ENSMUST00000148535
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018430 160.612±19.70 141.368±11.90 133.868±21.23 142.261±74.96 136.945±26.65 118.267±15.48 127.361±7.63 166.948±7.61 161.941±30.75 121.395±5.34 149.330±6.54 190.279±43.97 134.720±60.72 157.036±62.55
ENSMUST00000128870 N/A N/A N/A 23.739±0.00 N/A N/A N/A N/A N/A N/A N/A 30.951±0.00 32.814±20.45 13.733±0.00
ENSMUST00000148535 N/A N/A N/A N/A 17.358±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CM CIL_0003CM_0002 CGP 11:70519196-70527858
CIL_0001RF CIL_0001RF_0002 CGP 11:70525367-70558110

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005839 IDA proteasome core complex
GO:0051603 IEA proteolysis involved in cellular protein catabolic process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002240 psmb6 proteasome (prosome, macropain) subunit, beta type, 6 protein_coding Danio_rerio
ENSG00000142507 PSMB6 proteasome (prosome, macropain) subunit, beta type, 6 protein_coding Homo_sapiens

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