C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycomb group ring finger 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000103149 Pcgf2-005 ENSMUSG00000018537 10090 - 11:97689792-97692407 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000103149
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000103149 18.576±3.41 15.059±4.75 27.032±8.96 6.805±2.19 1.591±0.56 10.792±4.91 26.119±9.83 8.418±0.00 1.172±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SG CIL_0000SG_0002 CGP 11:97685826-97700497
CIL_0005QW CIL_0005QW_0002 CGP 11:97688823-97713500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0001701 IGI in utero embryonic development
GO:0001739 IDA sex chromatin
GO:0003682 IDA chromatin binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0009952 IGI anterior/posterior pattern specification
GO:0016573 IGI histone acetylation
GO:0016604 IDA nuclear body
GO:0031519 IDA PcG protein complex
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048706 IGI embryonic skeletal system development
GO:0070301 IDA cellular response to hydrogen peroxide
GO:2001234 IGI negative regulation of apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000610440 PCGF2-202 protein_coding Homo_sapiens 0 713
ENST00000610747 PCGF2-006 protein_coding Homo_sapiens 2e-37 159
ENST00000611883 PCGF2-005 protein_coding Homo_sapiens 0 713
ENST00000616129 PCGF2-001 protein_coding Homo_sapiens 0 697
ENST00000616199 PCGF2-002 protein_coding Homo_sapiens 0 713
ENST00000618506 PCGF2-003 protein_coding Homo_sapiens 0 645
ENST00000618941 PCGF2-004 protein_coding Homo_sapiens 0 645
ENST00000620225 PCGF2-201 protein_coding Homo_sapiens 0 713
ENST00000620783 CISD3-201 protein_coding Homo_sapiens 0 577

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