C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CTD nuclear envelope phosphatase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018559 Ctdnep1 10090 + 11:69981156-69990601 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000108593 Ctdnep1-001 69981156-69990601 protein_coding
  ENSMUST00000131531 Ctdnep1-002 69984254-69989548 retained_intron
  ENSMUST00000138246 Ctdnep1-004 69989071-69990157 retained_intron
  ENSMUST00000141623 Ctdnep1-005 69983720-69989559 protein_coding
  ENSMUST00000152226 Ctdnep1-003 69989091-69990402 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108593ENSMUST00000141623ENSMUST00000152226
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108593 47.743±6.80 42.683±11.04 34.738±3.52 46.109±2.68 41.426±11.36 47.592±9.38 46.717±7.14 37.236±2.23 20.538±6.00 42.971±6.62 90.802±10.42 39.924±13.07 31.232±6.45 38.237±1.31
ENSMUST00000141623 N/A N/A N/A N/A 63.535±0.00 N/A N/A N/A N/A N/A N/A 33.268±6.80 38.680±4.96 N/A
ENSMUST00000152226 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.103±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033I CIL_00033I_0002 CGP 11:69968222-69990601
CIL_00033F CIL_00033F_0003 CGP 11:69981156-69994951

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004722 ISS protein serine/threonine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005635 ISS nuclear envelope
GO:0005737 IDA:ISS cytoplasm
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006470 ISS protein dephosphorylation
GO:0006998 ISS nuclear envelope organization
GO:0007276 IGI gamete generation
GO:0007498 IMP mesoderm development
GO:0010867 ISS positive regulation of triglyceride biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0031965 ISS nuclear membrane
GO:0034504 ISS protein localization to nucleus
GO:0071595 ISS Nem1-Spo7 phosphatase complex
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000016519 ctdnep1a CTD nuclear envelope phosphatase 1a protein_coding Danio_rerio
ENSDARG00000035781 ctdnep1b CTD nuclear envelope phosphatase 1b protein_coding Danio_rerio
ENSG00000175826 CTDNEP1 CTD nuclear envelope phosphatase 1 protein_coding Homo_sapiens

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