C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD nuclear envelope phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000141623 Ctdnep1-005 ENSMUSG00000018559 10090 + 11:69983720-69989559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryPlacentaENSMUST00000141623
Transcript ID Breast Ovary Placenta
ENSMUST00000141623 63.535±0.00 33.268±6.80 38.680±4.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033I CIL_00033I_0002 CGP 11:69968222-69990601
CIL_00033F CIL_00033F_0003 CGP 11:69981156-69994951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0007276 IGI gamete generation
GO:0007498 IMP mesoderm development
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000029889 ctdnep1a-001 protein_coding Danio_rerio 0 427
ENST00000318988 CTDNEP1-003 protein_coding Homo_sapiens 0 817
ENST00000478867 RP11-435F17.3-001 processed_pseudogene Homo_sapiens 0 732
ENST00000506083 CTC-250P20.2-001 processed_pseudogene Homo_sapiens 0 651
ENST00000570380 CTDNEP1-008 nonsense_mediated_decay Homo_sapiens 0 488
ENST00000570385 CTDNEP1-010 retained_intron Homo_sapiens 0 327
ENST00000570484 CTDNEP1-011 retained_intron Homo_sapiens 1e-32 143
ENST00000570760 CTD-2545G14.7-001 nonsense_mediated_decay Homo_sapiens 2e-29 134
ENST00000570828 CTDNEP1-012 protein_coding Homo_sapiens 0 809
ENST00000571409 CTDNEP1-006 protein_coding Homo_sapiens 0 370
ENST00000572043 CTDNEP1-007 protein_coding Homo_sapiens 0 817
ENST00000573600 CTDNEP1-002 protein_coding Homo_sapiens 0 817
ENST00000574205 CTDNEP1-004 nonsense_mediated_decay Homo_sapiens 0 817
ENST00000574322 CTDNEP1-001 protein_coding Homo_sapiens 0 817
ENST00000575783 CTDNEP1-005 protein_coding Homo_sapiens 0 817
ENST00000576613 CTDNEP1-009 protein_coding Homo_sapiens 0 470
ENST00000577138 RP1-4G17.5-001 nonsense_mediated_decay Homo_sapiens 0 291

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