C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CTD nuclear envelope phosphatase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108593 Ctdnep1-001 ENSMUSG00000018559 10090 + 11:69981156-69990601 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000108593
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000108593 47.743±6.80 42.683±11.04 34.738±3.52 46.109±2.68 41.426±11.36 47.592±9.38 46.717±7.14 37.236±2.23 20.538±6.00 42.971±6.62 90.802±10.42 39.924±13.07 31.232±6.45 38.237±1.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033I CIL_00033I_0002 CGP 11:69968222-69990601
CIL_00033F CIL_00033F_0003 CGP 11:69981156-69994951

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004722 ISS protein serine/threonine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005635 ISS nuclear envelope
GO:0005737 IDA:ISS cytoplasm
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006470 ISS protein dephosphorylation
GO:0006998 ISS nuclear envelope organization
GO:0007276 IGI gamete generation
GO:0007498 IMP mesoderm development
GO:0010867 ISS positive regulation of triglyceride biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0031965 ISS nuclear membrane
GO:0034504 ISS protein localization to nucleus
GO:0071595 ISS Nem1-Spo7 phosphatase complex
GO:0090263 IMP positive regulation of canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000029889 ctdnep1a-001 protein_coding Danio_rerio 0 457
ENST00000318988 CTDNEP1-003 protein_coding Homo_sapiens 0 1862
ENST00000478867 RP11-435F17.3-001 processed_pseudogene Homo_sapiens 0 979
ENST00000506083 CTC-250P20.2-001 processed_pseudogene Homo_sapiens 0 856
ENST00000570380 CTDNEP1-008 nonsense_mediated_decay Homo_sapiens 0 728
ENST00000570385 CTDNEP1-010 retained_intron Homo_sapiens 0 327
ENST00000570484 CTDNEP1-011 retained_intron Homo_sapiens 0 316
ENST00000570760 CTD-2545G14.7-001 nonsense_mediated_decay Homo_sapiens 2e-34 150
ENST00000570828 CTDNEP1-012 protein_coding Homo_sapiens 0 900
ENST00000571409 CTDNEP1-006 protein_coding Homo_sapiens 0 957
ENST00000572043 CTDNEP1-007 protein_coding Homo_sapiens 0 1129
ENST00000573600 CTDNEP1-002 protein_coding Homo_sapiens 0 2054
ENST00000573699 ELP5-006 protein_coding Homo_sapiens 9.99995e-41 171
ENST00000574205 CTDNEP1-004 nonsense_mediated_decay Homo_sapiens 0 1640
ENST00000574322 CTDNEP1-001 protein_coding Homo_sapiens 0 2119
ENST00000575783 CTDNEP1-005 protein_coding Homo_sapiens 0 1205
ENST00000576613 CTDNEP1-009 protein_coding Homo_sapiens 0 503
ENST00000577138 RP1-4G17.5-001 nonsense_mediated_decay Homo_sapiens 0 294

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