C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: T-box 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018604 Tbx3 10090 + 5:119670669-119684724 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018748 Tbx3-001 119671018-119684724 protein_coding
  ENSMUST00000079719 Tbx3-201 119670669-119684561 protein_coding
  ENSMUST00000121021 Tbx3-002 119670862-119684724 protein_coding
  ENSMUST00000145647 Tbx3-003 119675445-119680630 retained_intron
  ENSMUST00000154680 Tbx3-004 119680249-119680832 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018748ENSMUST00000079719ENSMUST00000121021
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018748 1.862±1.35 66.346±2.15 5.464±1.04 0.061±0.00 3.623±1.99 1.795±0.70 0.603±0.14 0.700±0.10 1.929±1.63 7.618±1.70 0.719±0.03 7.121±3.03 1.500±0.47 0.233±0.11
ENSMUST00000079719 3.211±2.47 32.873±6.38 6.715±0.80 0.239±0.09 1.300±0.32 1.609±0.78 0.545±0.15 1.172±0.32 1.518±1.11 11.468±0.54 0.246±0.06 4.187±1.06 0.975±0.28 0.297±0.25
ENSMUST00000121021 2.151±1.34 27.049±3.37 7.280±0.19 0.296±0.14 3.380±0.96 1.439±0.39 0.745±0.31 0.934±0.55 0.253±0.08 6.640±2.51 0.616±0.22 7.439±2.66 2.896±1.46 0.208±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K7 CIL_0008K7_0002 VISTA 5:119367993-119968855
CIL_0008K6 CIL_0008K6_0002 VISTA 5:119368986-119969581
CIL_00092A CIL_00092A_0002 VISTA 5:119496787-120097947
CIL_00095S CIL_00095S_0002 VISTA 5:119521983-120124240
CIL_0004YZ CIL_0004YZ_0002 CGP 5:119670669-119885218

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001085 IPI RNA polymerase II transcription factor binding
GO:0001102 IPI RNA polymerase II activating transcription factor binding
GO:0001501 ISS skeletal system development
GO:0001568 IMP blood vessel development
GO:0001701 IMP in utero embryonic development
GO:0001947 IMP heart looping
GO:0003007 IMP heart morphogenesis
GO:0003151 IMP outflow tract morphogenesis
GO:0003167 IMP atrioventricular bundle cell differentiation
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007569 IDA cell aging
GO:0008284 ISS positive regulation of cell proliferation
GO:0008595 ISS anterior/posterior axis specification, embryo
GO:0009887 ISO organ morphogenesis
GO:0010159 IDA specification of organ position
GO:0019827 IMP stem cell maintenance
GO:0021761 IMP limbic system development
GO:0030539 ISS male genitalia development
GO:0030540 ISS female genitalia development
GO:0030857 IMP negative regulation of epithelial cell differentiation
GO:0030879 IMP mammary gland development
GO:0032275 ISS luteinizing hormone secretion
GO:0035108 IMP limb morphogenesis
GO:0035115 ISS embryonic forelimb morphogenesis
GO:0035136 ISO forelimb morphogenesis
GO:0042127 IMP regulation of cell proliferation
GO:0042733 ISS embryonic digit morphogenesis
GO:0043066 ISS negative regulation of apoptotic process
GO:0043565 ISS sequence-specific DNA binding
GO:0045662 ISS negative regulation of myoblast differentiation
GO:0045787 ISS positive regulation of cell cycle
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046884 ISS follicle-stimulating hormone secretion
GO:0048332 ISS mesoderm morphogenesis
GO:0055007 IMP cardiac muscle cell differentiation
GO:0060021 IGI palate development
GO:0060412 IMP ventricular septum morphogenesis
GO:0060444 IMP branching involved in mammary gland duct morphogenesis
GO:0060596 IGI mammary placode formation
GO:0060923 IMP cardiac muscle cell fate commitment
GO:0060931 IMP sinoatrial node cell development
GO:0090398 ISS cellular senescence
GO:2000648 IMP positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002216 tbx3a T-box 3a protein_coding Danio_rerio
ENSG00000135111 TBX3 T-box 3 protein_coding Homo_sapiens

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