C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0008K6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs482 VISTA 9606 12:114385728-114986369
GeneTranscriptPositionBiotype
ENSG00000089225 (TBX5)
T-box 5 		ENST00000310346 (TBX5-001) 114353931-114408442 protein_coding
ENST00000349716 (TBX5-003) 114353931-114408387 protein_coding
ENST00000405440 (TBX5-005) 114355381-114406084 protein_coding
ENST00000526441 (TBX5-002) 114366097-114403898 protein_coding
ENST00000552726 (TBX5-006) 114394878-114403949 processed_transcript
ENSG00000135111 (TBX3)
T-box 3 		ENST00000257566 (TBX3-002) 114670255-114683590 protein_coding
ENST00000349155 (TBX3-001) 114670254-114684164 protein_coding
ENST00000548503 (TBX3-005) 114677592-114679933 retained_intron
ENST00000552054 (TBX3-003) 114679956-114683434 retained_intron
ENST00000613550 (TBX3-201) 114671841-114683461 protein_coding
ENSG00000255399 (TBX5-AS1)
TBX5 antisense RNA 1 		ENST00000528549 (TBX5-AS1-005) 114408754-114412831 antisense
ENST00000531024 (TBX5-AS1-003) 114408205-114409999 antisense
ENST00000531202 (TBX5-AS1-002) 114408191-114410012 antisense
ENST00000532697 (TBX5-AS1-004) 114408196-114409614 antisense
ENSG00000257517 (RP4-601P9.1)
 ENST00000547876 (RP4-601P9.1-001) 114768674-114771851 lincRNA
ENSG00000257817 (RP4-601P9.2)
 ENST00000551875 (RP4-601P9.2-001) 114713811-114767957 lincRNA
ENSG00000258244 (OSTF1P1)
osteoclast stimulating factor 1 pseudogene 1 		ENST00000550242 (OSTF1P1-001) 114588194-114588802 processed_pseudogene
ENSG00000258254 (RP11-162N7.1)
 ENST00000547819 (RP11-162N7.1-001) 114621761-114622922 lincRNA
ENSG00000274879 (RP11-411G2.1)
 ENST00000400949 (RP11-411G2.1-001) 114929757-114929935 processed_pseudogene
CIL_0008K6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs482 VISTA 10090 5:119368986-119969581
GeneTranscriptPositionBiotype
ENSMUSG00000018263 (Tbx5)
T-box 5 		ENSMUST00000018407 (Tbx5-201) 119834663-119885218 protein_coding
ENSMUSG00000018604 (Tbx3)
T-box 3 		ENSMUST00000018748 (Tbx3-001) 119671018-119684724 protein_coding
ENSMUST00000079719 (Tbx3-201) 119670669-119684561 protein_coding
ENSMUST00000121021 (Tbx3-002) 119670862-119684724 protein_coding
ENSMUST00000145647 (Tbx3-003) 119675445-119680630 retained_intron
ENSMUST00000154680 (Tbx3-004) 119680249-119680832 processed_transcript
ENSMUSG00000085345 (Gm16064)
predicted gene 16064 		ENSMUST00000154997 (Gm16064-001) 119646134-119659262 lincRNA
ENSMUSG00000085708 (Gm16063)
predicted gene 16063 		ENSMUST00000156235 (Gm16063-001) 119625942-119634464 lincRNA
ENSMUSG00000086847 (Tbx3os2)
T-box 3, opposite strand 2 		ENSMUST00000135385 (Tbx3os2-001) 119685095-119691218 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008K6_0001ENSG00000089225ENST00000310346ENST00000349716ENST00000405440ENST00000526441ENST00000552726ENSG00000135111ENST00000257566ENST00000349155ENST00000548503ENST00000552054ENST00000613550ENSG00000255399ENST00000528549ENST00000531024ENST00000531202ENST00000532697ENSG00000257517ENST00000547876ENSG00000257817ENST00000551875ENSG00000258244ENST00000550242ENSG00000258254ENST00000547819ENSG00000274879ENST00000400949CIL_0008K6_0002ENSMUSG00000018263ENSMUST00000018407ENSMUSG00000018604ENSMUST00000018748ENSMUST00000079719ENSMUST00000121021ENSMUST00000145647ENSMUST00000154680ENSMUSG00000085345ENSMUST00000154997ENSMUSG00000085708ENSMUST00000156235ENSMUSG00000086847ENSMUST00000135385
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0008K6_0001ENSG00000089225ENST00000310346ENST00000349716ENST00000405440ENSG00000135111ENST00000257566ENST00000349155ENST00000613550ENSG00000255399ENST00000528549ENSG00000257517ENST00000547876ENSG00000257817ENST00000551875ENSG00000258244ENST00000550242ENSG00000258254ENST00000547819ENSG00000274879ENST00000400949CIL_0008K6_0002ENSMUSG00000018263ENSMUST00000018407ENSMUSG00000018604ENSMUST00000018748ENSMUST00000079719ENSMUST00000121021ENSMUSG00000085345ENSMUST00000154997ENSMUSG00000085708ENSMUST00000156235ENSMUSG00000086847ENSMUST00000135385
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000089225 ENST00000310346 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.491±0.00 N/A 0.006±0.00 2.140±0.00 N/A
ENST00000349716 0.132±0.00 N/A N/A 0.042±0.00 0.035±0.00 N/A N/A N/A N/A 1.467±0.00 0.060±0.00 0.089±0.04 N/A N/A
ENST00000405440 0.121±0.00 N/A N/A 0.034±0.00 0.590±0.40 N/A 4.736±3.64 N/A N/A 2.321±1.13 0.115±0.00 0.126±0.00 N/A 0.050±0.03
ENST00000526441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000135111 ENST00000257566 1.608±0.00 2.100±0.00 N/A 0.331±0.00 3.333±0.00 N/A 1.352±0.00 0.674±0.00 2.630±0.00 0.762±0.00 2.130±0.00 2.317±1.47 7.643±0.95 1.889±1.75
ENST00000349155 9.186±0.00 3.279±0.00 0.821±0.00 0.308±0.10 3.617±2.70 4.261±0.00 1.748±1.17 4.668±2.13 4.627±1.79 8.492±5.42 3.447±0.00 6.226±4.92 13.077±0.25 2.638±2.03
ENST00000548503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552054 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613550 N/A N/A N/A 0.267±0.00 N/A N/A 0.251±0.00 N/A N/A 6.408±0.00 N/A N/A N/A N/A
ENSG00000255399 ENST00000528549 N/A N/A N/A N/A 0.074±0.00 0.011±0.00 N/A N/A N/A 2.197±1.44 N/A 0.059±0.04 3.812±0.07 0.028±0.01
ENST00000531024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531202 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532697 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000257517 ENST00000547876 N/A N/A N/A 0.029±0.00 N/A 0.024±0.00 0.026±0.00 N/A 0.024±0.00 N/A N/A N/A N/A 0.240±0.09
ENSG00000257817 ENST00000551875 0.020±0.00 0.149±0.00 N/A 0.053±0.00 0.118±0.00 0.064±0.00 0.027±0.01 0.625±0.49 0.060±0.00 0.043±0.00 0.043±0.00 0.055±0.01 0.091±0.00 0.215±0.08
ENSG00000258244 ENST00000550242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00
ENSG00000258254 ENST00000547819 N/A N/A N/A N/A 0.061±0.00 N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 0.196±0.00
ENSG00000274879 ENST00000400949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.626±0.00 0.173±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000018263 ENSMUST00000018407 0.245±0.20 0.208±0.08 1.759±0.07 0.028±0.00 0.595±0.30 0.022±0.01 5.500±2.16 0.026±0.01 0.016±0.02 7.312±2.92 0.016±0.01 0.024±0.01 0.399±0.30 1.291±0.09
ENSMUSG00000018604 ENSMUST00000018748 1.862±1.35 66.346±2.15 5.464±1.04 0.061±0.00 3.623±1.99 1.795±0.70 0.603±0.14 0.700±0.10 1.929±1.63 7.618±1.70 0.719±0.03 7.121±3.03 1.500±0.47 0.233±0.11
ENSMUST00000079719 3.211±2.47 32.873±6.38 6.715±0.80 0.239±0.09 1.300±0.32 1.609±0.78 0.545±0.15 1.172±0.32 1.518±1.11 11.468±0.54 0.246±0.06 4.187±1.06 0.975±0.28 0.297±0.25
ENSMUST00000121021 2.151±1.34 27.049±3.37 7.280±0.19 0.296±0.14 3.380±0.96 1.439±0.39 0.745±0.31 0.934±0.55 0.253±0.08 6.640±2.51 0.616±0.22 7.439±2.66 2.896±1.46 0.208±0.12
ENSMUST00000145647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154680 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000085345 ENSMUST00000154997 N/A 0.313±0.11 N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A 0.481±0.00 0.120±0.07 N/A
ENSMUSG00000085708 ENSMUST00000156235 0.062±0.05 1.731±0.79 0.089±0.03 0.014±0.00 0.088±0.00 0.032±0.00 0.028±0.00 0.033±0.02 0.807±0.67 0.043±0.03 N/A 0.093±0.06 0.063±0.05 0.574±0.41
ENSMUSG00000086847 ENSMUST00000135385 0.135±0.05 0.398±0.09 2.908±0.11 0.027±0.02 0.512±0.13 0.091±0.04 0.021±0.00 0.022±0.00 0.020±0.02 0.091±0.05 N/A 0.122±0.08 0.253±0.12 0.070±0.05

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