C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018810 Cbx1-005 ENSMUSG00000018666 10090 + 11:96789127-96803969 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungOvaryTestisENSMUST00000018810
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Ovary Testis
ENSMUST00000018810 2.244±0.23 16.253±2.97 3.777±0.00 8.294±6.00 6.408±3.80 1.244±0.22 5.356±2.44 14.109±3.13 1.872±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IDA chromatin
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0005515 IPI protein binding
GO:0005721 IDA pericentric heterochromatin
GO:0010369 IDA chromocenter
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225603 CBX1-001 protein_coding Homo_sapiens 0 872
ENST00000393408 CBX1-002 protein_coding Homo_sapiens 0 676
ENST00000402583 CBX1-004 protein_coding Homo_sapiens 0 660
ENST00000413296 CBX1P3-001 processed_pseudogene Homo_sapiens 0 407
ENST00000439415 CBX1P4-001 processed_pseudogene Homo_sapiens 0 361
ENST00000440184 CBX1P1-001 processed_pseudogene Homo_sapiens 0 555
ENST00000444685 CBX1-003 protein_coding Homo_sapiens 0 542
ENST00000453841 CBX1P2-001 processed_pseudogene Homo_sapiens 0 424
ENST00000495350 CBX1-005 protein_coding Homo_sapiens 0 760
ENST00000581003 CBX1-006 protein_coding Homo_sapiens 0 676

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