C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chromobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093943 Cbx1-001 ENSMUSG00000018666 10090 + 11:96789159-96808640 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000093943
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000093943 5.398±0.00 15.219±3.02 5.850±0.00 11.873±2.60 4.352±0.88 8.222±2.52 1.607±0.00 4.479±0.39 5.638±3.67 5.113±0.14 11.984±2.29 12.449±2.28 4.112±0.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000785 IDA chromatin
GO:0001939 IDA female pronucleus
GO:0001940 IDA male pronucleus
GO:0005515 IPI protein binding
GO:0005721 IDA pericentric heterochromatin
GO:0005819 IEA spindle
GO:0010369 IDA chromocenter
GO:0019899 IEA enzyme binding
GO:0042802 IPI identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:1990226 IEA histone methyltransferase binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225603 CBX1-001 protein_coding Homo_sapiens 0 1083
ENST00000393408 CBX1-002 protein_coding Homo_sapiens 0 918
ENST00000402583 CBX1-004 protein_coding Homo_sapiens 0 808
ENST00000413296 CBX1P3-001 processed_pseudogene Homo_sapiens 0 538
ENST00000439415 CBX1P4-001 processed_pseudogene Homo_sapiens 0 527
ENST00000440184 CBX1P1-001 processed_pseudogene Homo_sapiens 0 571
ENST00000444685 CBX1-003 protein_coding Homo_sapiens 0 542
ENST00000453841 CBX1P2-001 processed_pseudogene Homo_sapiens 0 610
ENST00000495350 CBX1-005 protein_coding Homo_sapiens 0 693
ENST00000581003 CBX1-006 protein_coding Homo_sapiens 0 869

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