C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: CDK5 regulatory subunit associated protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018669 Cdk5rap3 10090 - 11:96907426-96916496 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000103152 Cdk5rap3-001 96907426-96916496 protein_coding
  ENSMUST00000127048 Cdk5rap3-002 96911945-96916392 protein_coding
  ENSMUST00000130767 Cdk5rap3-006 96912685-96916367 retained_intron
  ENSMUST00000130774 Cdk5rap3-004 96912348-96916414 protein_coding
  ENSMUST00000134732 Cdk5rap3-010 96907426-96916496 nonsense_mediated_decay
  ENSMUST00000144731 Cdk5rap3-003 96912217-96916366 protein_coding
  ENSMUST00000147573 Cdk5rap3-011 96912238-96916414 nonsense_mediated_decay
  ENSMUST00000149033 Cdk5rap3-008 96911456-96912869 retained_intron
  ENSMUST00000153305 Cdk5rap3-007 96911984-96916429 nonsense_mediated_decay
  ENSMUST00000154289 Cdk5rap3-009 96907816-96908758 retained_intron
  ENSMUST00000156315 Cdk5rap3-005 96911962-96916107 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000103152
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000103152 17.757±0.57 12.219±2.13 17.024±0.00 17.055±2.00 13.391±1.18 35.206±0.00 6.176±1.18 20.081±0.78 21.703±2.88 11.897±0.56 6.680±1.56 32.673±4.33 22.355±6.14 29.909±6.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000079 ISS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005575 ND cellular_component
GO:0016020 IEA membrane
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0071569 ISO protein ufmylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045092 cdk5rap3 CDK5 regulatory subunit associated protein 3 protein_coding Danio_rerio
ENSG00000108465 CDK5RAP3 CDK5 regulatory subunit associated protein 3 protein_coding Homo_sapiens

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