C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000147573 Cdk5rap3-011 ENSMUSG00000018669 10090 - 11:96912238-96916414 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097B CIL_00097B_0002 VISTA 11:96441475-97042608
CIL_0007WA CIL_0007WA_0002 VISTA 11:96526222-97127190
CIL_0007RQ CIL_0007RQ_0002 VISTA 11:96583318-97187851

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0071569 ISO protein ufmylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338399 CDK5RAP3-001 protein_coding Homo_sapiens 0 571
ENST00000445194 RP5-854E16.2-001 processed_pseudogene Homo_sapiens 0 527
ENST00000536708 CDK5RAP3-010 protein_coding Homo_sapiens 0 571
ENST00000577442 CDK5RAP3-020 retained_intron Homo_sapiens 4e-25 119
ENST00000577664 CDK5RAP3-034 nonsense_mediated_decay Homo_sapiens 0 571
ENST00000578018 CDK5RAP3-012 protein_coding Homo_sapiens 8e-17 92
ENST00000578134 CDK5RAP3-024 processed_transcript Homo_sapiens 0 497
ENST00000578525 CDK5RAP3-025 nonsense_mediated_decay Homo_sapiens 0 497
ENST00000578733 CDK5RAP3-015 retained_intron Homo_sapiens 8e-17 92
ENST00000579175 CDK5RAP3-037 protein_coding Homo_sapiens 0 571
ENST00000579605 CDK5RAP3-022 nonsense_mediated_decay Homo_sapiens 3e-25 119
ENST00000579632 CDK5RAP3-011 protein_coding Homo_sapiens 0 571
ENST00000579853 CDK5RAP3-014 retained_intron Homo_sapiens 4e-25 119
ENST00000580287 CDK5RAP3-008 retained_intron Homo_sapiens 0 241
ENST00000580391 CDK5RAP3-003 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000580670 CDK5RAP3-009 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000581160 CDK5RAP3-023 processed_transcript Homo_sapiens 3e-25 119
ENST00000581708 CDK5RAP3-021 processed_transcript Homo_sapiens 0 287
ENST00000583182 CDK5RAP3-036 retained_intron Homo_sapiens 3e-16 90
ENST00000583352 CDK5RAP3-017 protein_coding Homo_sapiens 0 420
ENST00000584042 CDK5RAP3-018 retained_intron Homo_sapiens 9e-17 92
ENST00000584063 CDK5RAP3-004 retained_intron Homo_sapiens 0 241
ENST00000584168 CDK5RAP3-006 retained_intron Homo_sapiens 0 241
ENST00000584525 CDK5RAP3-026 retained_intron Homo_sapiens 3e-25 119
ENST00000584592 CDK5RAP3-035 processed_transcript Homo_sapiens 2e-16 90
ENST00000584991 CDK5RAP3-002 nonsense_mediated_decay Homo_sapiens 0 558
ENST00000585163 CDK5RAP3-005 retained_intron Homo_sapiens 0 241

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