C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear distribution gene E-like homolog 1 (A. nidulans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018736 Ndel1 10090 - 11:68821434-68871858 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018880 Ndel1-001 68821434-68853135 protein_coding
  ENSMUST00000101017 Ndel1-003 68829303-68871858 protein_coding
  ENSMUST00000108672 Ndel1-002 68829318-68853041 protein_coding
  ENSMUST00000127469 Ndel1-006 68839914-68864993 processed_transcript
  ENSMUST00000143899 Ndel1-004 68822110-68839920 processed_transcript
  ENSMUST00000144300 Ndel1-005 68836182-68859996 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018880ENSMUST00000108672ENSMUST00000127469ENSMUST00000143899ENSMUST00000144300
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018880 14.632±2.81 52.019±2.75 21.983±2.79 18.335±5.08 13.673±1.24 19.207±7.50 8.485±1.06 28.967±3.95 16.500±4.22 21.115±5.47 8.272±5.93 23.378±4.78 23.825±10.53 33.376±15.25
ENSMUST00000108672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.959±0.00 N/A N/A
ENSMUST00000127469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.016±0.00 36.141±0.00 137.429±0.00
ENSMUST00000143899 8.894±0.25 51.290±9.55 10.235±0.00 N/A 15.451±3.99 17.766±3.80 6.465±0.63 13.840±0.00 5.570±0.45 13.085±2.76 10.170±2.48 23.565±6.75 20.106±9.73 N/A
ENSMUST00000144300 N/A N/A N/A 88.911±0.00 N/A N/A N/A N/A N/A N/A N/A 33.906±20.83 81.221±20.59 69.031±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088C CIL_00088C_0002 VISTA 11:68323475-68924174
CIL_0009AZ CIL_0009AZ_0002 VISTA 11:68337699-68940744
CIL_0002AE CIL_0002AE_0002 CGP 11:68821434-68895777

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IGI microtubule cytoskeleton organization
GO:0000776 IEA kinetochore
GO:0001764 IGI neuron migration
GO:0001833 IMP inner cell mass cell proliferation
GO:0005515 IPI protein binding
GO:0005635 ISS nuclear envelope
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005813 IDA centrosome
GO:0005815 IGI microtubule organizing center
GO:0005871 IEA kinesin complex
GO:0005874 IEA microtubule
GO:0005875 IDA microtubule associated complex
GO:0006508 IEA proteolysis
GO:0007059 IEA chromosome segregation
GO:0007100 IGI mitotic centrosome separation
GO:0008017 IDA microtubule binding
GO:0008090 IDA retrograde axon cargo transport
GO:0010975 IMP regulation of neuron projection development
GO:0016477 IMP cell migration
GO:0021799 IMP cerebral cortex radially oriented cell migration
GO:0021955 IMP central nervous system neuron axonogenesis
GO:0030424 IDA axon
GO:0031175 IEA neuron projection development
GO:0031252 IDA cell leading edge
GO:0032403 IEA protein complex binding
GO:0032864 IDA activation of Cdc42 GTPase activity
GO:0043014 IDA alpha-tubulin binding
GO:0043203 IDA axon hillock
GO:0044297 IEA cell body
GO:0045773 IEA positive regulation of axon extension
GO:0047496 IGI vesicle transport along microtubule
GO:0048487 IDA beta-tubulin binding
GO:0048680 IEA positive regulation of axon regeneration
GO:0051081 ISS nuclear envelope disassembly
GO:0051642 IMP centrosome localization
GO:0060052 IMP neurofilament cytoskeleton organization
GO:0060053 IDA neurofilament cytoskeleton
GO:0070012 IEA oligopeptidase activity
GO:1990138 IGI neuron projection extension

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010953 ndel1a nudE nuclear distribution gene E homolog like 1 (A. nidulans) A protein_coding Danio_rerio
ENSDARG00000038190 ndel1b nudE nuclear distribution gene E homolog like 1 (A. nidulans) B protein_coding Danio_rerio
ENSG00000166579 NDEL1 nudE neurodevelopment protein 1-like 1 protein_coding Homo_sapiens

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