C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RAD51 homolog D
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000018841 Rad51d 10090 - 11:82876434-82890614 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000018985 Rad51d-001 82876699-82890614 protein_coding
  ENSMUST00000021033 Rad51d-005 82878737-82890589 protein_coding
  ENSMUST00000092844 Rad51d-003 82878737-82890589 protein_coding
  ENSMUST00000100718 Rad51d-006 82878737-82890589 nonsense_mediated_decay
  ENSMUST00000135963 Rad51d-004 82878737-82890589 nonsense_mediated_decay
  ENSMUST00000146053 Rad51d-002 82876434-82890589 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018985ENSMUST00000021033ENSMUST00000092844ENSMUST00000100718ENSMUST00000135963ENSMUST00000146053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018985 8.162±1.58 3.687±0.97 2.639±0.13 1.923±0.20 6.613±1.69 5.153±1.04 2.455±0.11 4.548±1.01 2.303±0.89 3.806±0.71 0.571±0.13 5.484±1.38 1.182±0.54 1.331±0.60
ENSMUST00000021033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.638±0.00 N/A N/A N/A
ENSMUST00000092844 N/A 3.934±0.30 N/A N/A N/A 2.543±0.07 N/A N/A N/A N/A 0.905±0.06 5.201±0.90 2.249±1.22 3.373±0.00
ENSMUST00000100718 6.504±3.40 3.091±0.00 3.572±0.00 4.287±2.97 3.787±0.36 3.453±0.99 2.025±0.42 3.001±0.63 1.699±0.66 2.296±0.56 0.369±0.00 5.990±2.68 3.163±1.56 3.676±1.59
ENSMUST00000135963 N/A N/A N/A 5.540±0.00 N/A 2.669±0.00 N/A N/A 1.060±0.27 N/A 0.978±0.41 5.377±1.20 2.846±1.20 2.478±0.00
ENSMUST00000146053 N/A 1.036±0.00 N/A N/A N/A N/A N/A N/A 0.552±0.00 0.589±0.00 0.259±0.00 1.203±0.01 0.376±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ES CIL_0006ES_0002 CGP 11:82876434-82900801

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000400 IEA four-way junction DNA binding
GO:0000723 ISS telomere maintenance
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0000781 ISS chromosome, telomeric region
GO:0003677 IEA DNA binding
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005657 ISS replication fork
GO:0005813 ISS centrosome
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0008094 ISS DNA-dependent ATPase activity
GO:0033063 ISS Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0042148 ISS strand invasion
GO:0043015 ISS gamma-tubulin binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026400 rad51d RAD51 homolog D (S. cerevisiae) protein_coding Danio_rerio
ENSG00000185379 RAD51D RAD51 paralog D protein_coding Homo_sapiens

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