C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000018985 Rad51d-001 ENSMUSG00000018841 10090 - 11:82876699-82890614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000018985
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000018985 8.162±1.58 3.687±0.97 2.639±0.13 1.923±0.20 6.613±1.69 5.153±1.04 2.455±0.11 4.548±1.01 2.303±0.89 3.806±0.71 0.571±0.13 5.484±1.38 1.182±0.54 1.331±0.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ES CIL_0006ES_0002 CGP 11:82876434-82900801

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000400 IEA four-way junction DNA binding
GO:0000723 ISS telomere maintenance
GO:0000724 ISS double-strand break repair via homologous recombination
GO:0000781 ISS chromosome, telomeric region
GO:0003697 ISS single-stranded DNA binding
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005657 ISS replication fork
GO:0005813 ISS centrosome
GO:0006200 IEA ATP catabolic process
GO:0008094 ISS DNA-dependent ATPase activity
GO:0033063 ISS Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0042148 ISS strand invasion
GO:0043015 ISS gamma-tubulin binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335858 RAD51D-003 protein_coding Homo_sapiens 0 429
ENST00000345365 RAD51D-001 protein_coding Homo_sapiens 0 928
ENST00000394589 RAD51D-009 protein_coding Homo_sapiens 0 928
ENST00000460118 RAD51D-007 protein_coding Homo_sapiens 0 512
ENST00000586044 RAD51D-002 nonsense_mediated_decay Homo_sapiens 0 675
ENST00000586210 RAD51D-008 nonsense_mediated_decay Homo_sapiens 0 579
ENST00000587405 RAD51D-020 protein_coding Homo_sapiens 0 553
ENST00000587977 RAD51D-010 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000588372 RAD51D-004 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000588594 RAD51D-013 nonsense_mediated_decay Homo_sapiens 0 429
ENST00000590016 RAD51D-012 protein_coding Homo_sapiens 0 673
ENST00000591723 RAD51L3-RFFL-003 protein_coding Homo_sapiens 0 381
ENST00000592181 RAD51L3-RFFL-002 protein_coding Homo_sapiens 0 627
ENST00000592577 RAD51D-022 protein_coding Homo_sapiens 0 723
ENST00000593039 RAD51L3-RFFL-001 protein_coding Homo_sapiens 0 381

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