C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 homolog D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135963 Rad51d-004 ENSMUSG00000018841 10090 - 11:82878737-82890589 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLiverMuscleOvaryPlacentaTestisENSMUST00000135963
Transcript ID Brain Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000135963 5.540±0.00 2.669±0.00 1.060±0.27 0.978±0.41 5.377±1.20 2.846±1.20 2.478±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006ES CIL_0006ES_0002 CGP 11:82876434-82900801

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005524 IEA ATP binding
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0008094 IEA DNA-dependent ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000335858 RAD51D-003 protein_coding Homo_sapiens 9.94922e-44 182
ENST00000345365 RAD51D-001 protein_coding Homo_sapiens 0 680
ENST00000394589 RAD51D-009 protein_coding Homo_sapiens 0 680
ENST00000460118 RAD51D-007 protein_coding Homo_sapiens 0 265
ENST00000586044 RAD51D-002 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000586210 RAD51D-008 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000587405 RAD51D-020 protein_coding Homo_sapiens 0 425
ENST00000587977 RAD51D-010 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000588372 RAD51D-004 nonsense_mediated_decay Homo_sapiens 2e-22 111
ENST00000588594 RAD51D-013 nonsense_mediated_decay Homo_sapiens 9.94922e-44 182
ENST00000590016 RAD51D-012 protein_coding Homo_sapiens 0 425
ENST00000591723 RAD51L3-RFFL-003 protein_coding Homo_sapiens 5.04467e-44 182
ENST00000592181 RAD51L3-RFFL-002 protein_coding Homo_sapiens 0 427
ENST00000592577 RAD51D-022 protein_coding Homo_sapiens 0 619
ENST00000593039 RAD51L3-RFFL-001 protein_coding Homo_sapiens 9.94922e-44 182

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