C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019199 Plod1-001 ENSMUSG00000019055 10090 - 4:147909753-147936767 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019199
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019199 31.978±12.78 19.853±3.02 10.704±1.45 6.081±1.70 22.407±5.65 13.596±1.63 16.262±0.59 16.988±1.40 14.019±2.75 21.957±6.28 8.802±0.28 29.153±7.97 44.375±14.62 2.690±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001666 IEA response to hypoxia
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0008475 IEA procollagen-lysine 5-dioxygenase activity
GO:0016020 IEA membrane
GO:0031418 IEA L-ascorbic acid binding
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000196061 PLOD1-001 protein_coding Homo_sapiens 0 2409
ENST00000358133 PLOD1-006 processed_transcript Homo_sapiens 0 638
ENST00000429000 PLOD1-003 protein_coding Homo_sapiens 0 732
ENST00000449038 PLOD1-005 protein_coding Homo_sapiens 0 514
ENST00000465920 PLOD1-007 retained_intron Homo_sapiens 0 407
ENST00000470133 PLOD1-010 retained_intron Homo_sapiens 0 272
ENST00000485046 PLOD1-004 processed_transcript Homo_sapiens 0 996
ENST00000491536 PLOD1-009 processed_transcript Homo_sapiens 0 440

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