C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019303 Psmc3ip 10090 - 11:101091823-101095436 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019447 Psmc3ip-001 101091823-101095436 protein_coding
  ENSMUST00000126386 Psmc3ip-002 101092132-101095400 retained_intron
  ENSMUST00000134520 Psmc3ip-003 101092157-101094160 retained_intron
  ENSMUST00000142545 Psmc3ip-004 101092487-101095376 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019447ENSMUST00000126386ENSMUST00000142545
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019447 4.445±0.64 6.141±0.00 6.751±1.01 8.837±1.87 3.667±0.10 10.726±0.14 2.294±0.28 5.920±0.57 7.380±3.47 4.332±0.79 1.526±0.38 5.494±1.22 7.475±2.74 26.060±6.99
ENSMUST00000126386 N/A N/A N/A N/A N/A N/A N/A N/A 9.071±0.98 N/A N/A N/A N/A 23.758±9.87
ENSMUST00000142545 N/A N/A N/A 5.637±0.00 N/A N/A N/A N/A N/A N/A N/A 29.172±0.00 41.584±0.00 354.777±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GR CIL_0004GR_0002 CGP 11:101082565-101092207
CIL_00045X CIL_00045X_0002 CGP 11:101087277-101095436
CIL_00045R CIL_00045R_0002 CGP 11:101091823-101119893

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006310 IEA DNA recombination
GO:0030374 IEA ligand-dependent nuclear receptor transcription coactivator activity
GO:0051321 IEA meiotic cell cycle
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037892 psmc3ip PSMC3 interacting protein protein_coding Danio_rerio
ENSG00000131470 PSMC3IP PSMC3 interacting protein protein_coding Homo_sapiens

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