C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PSMC3 interacting protein
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000131470 PSMC3IP 9606 - 17:42572315-42577831 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000253789 PSMC3IP-001 42572323-42577831 protein_coding
  ENST00000393795 PSMC3IP-002 42572315-42577795 protein_coding
  ENST00000586337 PSMC3IP-011 42572896-42577688 nonsense_mediated_decay
  ENST00000587209 PSMC3IP-007 42572343-42577697 protein_coding
  ENST00000587268 PSMC3IP-010 42576677-42577672 retained_intron
  ENST00000588544 PSMC3IP-004 42572962-42577795 nonsense_mediated_decay
  ENST00000589505 PSMC3IP-003 42572962-42577795 retained_intron
  ENST00000590760 PSMC3IP-008 42572962-42577696 protein_coding
  ENST00000590931 PSMC3IP-005 42572962-42577795 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000253789ENST00000393795ENST00000586337ENST00000587209ENST00000590760
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000253789 N/A N/A 4.931±0.00 2.838±0.00 5.323±0.00 9.457±0.00 7.653±0.00 6.077±0.00 N/A N/A N/A N/A
ENST00000393795 9.027±0.00 1.828±0.00 4.964±0.00 3.949±0.00 5.335±0.00 N/A 2.652±1.40 3.997±0.00 18.803±0.00 6.512±3.55 5.674±2.31 11.637±1.40
ENST00000586337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.188±0.00
ENST00000587209 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.370±0.00 2.822±0.00 6.154±0.00
ENST00000590760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.925±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004GR CIL_0004GR_0001 CGP 17:42561467-42573239
CIL_00045X CIL_00045X_0001 CGP 17:42567068-42577831
CIL_00045R CIL_00045R_0001 CGP 17:42572315-42610623

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006310 IEA DNA recombination
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0030374 IMP ligand-dependent nuclear receptor transcription coactivator activity
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0051321 IEA meiotic cell cycle
GO:2001141 IMP regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000037892 psmc3ip PSMC3 interacting protein protein_coding Danio_rerio
ENSMUSG00000019303 Psmc3ip proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein protein_coding Mus_musculus

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