C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycerophosphodiester phosphodiesterase domain containing 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019359 Gdpd2 10090 + X:100729873-100738895 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019503 Gdpd2-001 100729942-100738894 protein_coding
  ENSMUST00000113744 Gdpd2-005 100730186-100738894 protein_coding
  ENSMUST00000144912 Gdpd2-004 100729873-100732448 processed_transcript
  ENSMUST00000151572 Gdpd2-003 100736340-100738895 retained_intron
  ENSMUST00000156336 Gdpd2-002 100729938-100735213 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019503ENSMUST00000113744ENSMUST00000144912ENSMUST00000151572ENSMUST00000156336
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019503 0.184±0.00 0.287±0.00 N/A 2.691±1.88 0.378±0.03 0.710±0.01 N/A 0.322±0.19 0.089±0.02 1.098±0.25 N/A 5.403±3.37 0.191±0.18 0.185±0.17
ENSMUST00000113744 0.049±0.00 0.347±0.05 0.018±0.00 1.316±0.00 0.052±0.02 0.545±0.10 0.035±0.03 0.481±0.00 0.069±0.00 1.209±0.49 0.113±0.00 3.935±1.22 0.414±0.44 N/A
ENSMUST00000144912 N/A 0.390±0.00 N/A N/A 0.897±0.18 N/A N/A N/A 0.201±0.06 N/A N/A N/A N/A N/A
ENSMUST00000151572 N/A N/A N/A N/A 0.290±0.21 N/A 0.051±0.01 N/A 0.040±0.00 N/A 0.039±0.00 N/A N/A 0.227±0.00
ENSMUST00000156336 0.032±0.01 0.042±0.00 0.035±0.00 2.719±0.00 0.052±0.00 0.156±0.08 0.033±0.00 N/A 0.015±0.00 N/A N/A 2.586±0.19 0.016±0.00 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009H CIL_00009H_0002 CGP X:100625737-100738895
CIL_00009K CIL_00009K_0002 CGP X:100729873-100818410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0006071 IEA glycerol metabolic process
GO:0006629 IEA lipid metabolic process
GO:0008889 IEA glycerophosphodiester phosphodiesterase activity
GO:0016021 IEA integral component of membrane
GO:0046872 IEA metal ion binding
GO:0047394 IEA glycerophosphoinositol inositolphosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000073870 GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 protein_coding Danio_rerio
ENSG00000130055 GDPD2 glycerophosphodiester phosphodiesterase domain containing 2 protein_coding Homo_sapiens

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