C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: XPA binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019614 Xab2-001 ENSMUSG00000019470 10090 - 8:3610087-3621316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019614
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019614 29.873±6.62 17.906±9.58 26.453±6.88 21.725±4.92 23.946±5.59 20.514±2.47 10.852±2.00 16.035±1.05 17.271±8.81 29.492±1.88 5.104±0.52 42.290±11.55 26.215±6.85 28.509±5.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00043E CIL_00043E_0002 CGP 8:3587450-3621316
CIL_000438 CIL_000438_0002 CGP 8:3608421-3624231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001824 IMP blastocyst development
GO:0003674 ND molecular_function
GO:0006283 ISS transcription-coupled nucleotide-excision repair
GO:0006351 ISS transcription, DNA-templated
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358368 XAB2-001 protein_coding Homo_sapiens 0 3214
ENST00000595288 XAB2-002 retained_intron Homo_sapiens 0 1205
ENST00000596134 XAB2-003 retained_intron Homo_sapiens 0 372
ENST00000600230 XAB2-004 retained_intron Homo_sapiens 0 621

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