C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 3A (BRIGHT-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019564 Arid3a 10090 + 10:79927043-79955018 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019708 Arid3a-001 79927043-79955018 protein_coding
  ENSMUST00000105376 Arid3a-003 79927341-79954703 protein_coding
  ENSMUST00000105377 Arid3a-002 79927139-79954711 protein_coding
  ENSMUST00000131118 Arid3a-005 79930424-79931218 protein_coding
  ENSMUST00000135005 Arid3a-004 79946279-79952643 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019708ENSMUST00000105376ENSMUST00000105377ENSMUST00000131118ENSMUST00000135005
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019708 0.560±0.06 1.297±0.57 0.614±0.14 1.154±0.14 1.817±0.77 1.049±0.28 0.283±0.09 1.009±0.20 2.082±1.25 1.210±0.19 0.458±0.05 1.264±0.52 10.235±6.70 N/A
ENSMUST00000105376 1.252±0.57 1.140±0.15 0.784±0.04 1.180±0.23 1.802±0.66 1.653±0.18 0.272±0.10 1.251±0.23 1.898±1.60 1.599±0.27 0.280±0.14 1.681±0.63 12.287±6.30 4.409±0.00
ENSMUST00000105377 0.158±0.00 0.624±0.12 N/A 0.178±0.00 N/A N/A 0.268±0.00 N/A 0.074±0.01 N/A N/A 0.831±0.08 4.833±0.00 N/A
ENSMUST00000131118 N/A 2.603±0.66 N/A N/A N/A N/A N/A N/A 0.395±0.08 N/A N/A 3.026±0.11 N/A 12.382±1.53
ENSMUST00000135005 0.406±0.00 1.139±0.23 N/A N/A 2.284±0.44 1.661±0.40 0.292±0.00 1.292±0.30 0.299±0.11 1.736±0.50 N/A 2.168±0.56 N/A 7.358±1.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000I3 CIL_0000I3_0002 CGP 10:79916971-79955018
CIL_0004VT CIL_0004VT_0002 CGP 10:79927043-79969246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0042803 IPI protein homodimerization activity
GO:0045121 IEA membrane raft
GO:0045944 IGI:IMP positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070843 ARID3A AT rich interactive domain 3A (BRIGHT-like) protein_coding Danio_rerio
ENSG00000116017 ARID3A AT rich interactive domain 3A (BRIGHT-like) protein_coding Homo_sapiens

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